Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,867,084 – 12,867,204 |
Length | 120 |
Max. P | 0.682913 |
Location | 12,867,084 – 12,867,204 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -34.33 |
Consensus MFE | -31.36 |
Energy contribution | -31.86 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.91 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12867084 120 - 27905053 CGCGAACUCGGUGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAGCGAUGUGGCAUUUCCCUUAAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGC .(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -34.71) >DroSec_CAF1 36768 120 - 1 CGCGAACUCGGCGGCUUGUAGAUGUCAAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU .(.(((((.((((((((.(((((((...(((((....)))))....))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -34.11) >DroSim_CAF1 37419 120 - 1 CGCGAACUCGGCGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU .(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -36.61) >DroYak_CAF1 36845 120 - 1 CGCGAACUCGGUGGCUUGUAGAUGUCGAAUUUCUUGAAAAAUAUCUGCAUCUGGGAGCUUAAUAGUGAGGUUGCAUUCCCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU .(((((((..((((((((((((((((((.....))))....))))))))((.(((((..((((......))))..)))))...)).......))))))...)))).)))........... ( -31.90) >consensus CGCGAACUCGGCGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU .(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).))))...........(((((...................)))))........))))))))).)... (-31.36 = -31.86 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:27 2006