Locus 4893

Sequence ID 3R_DroMel_CAF1
Location 12,866,684 – 12,866,804
Length 120
Max. P 0.512843
window8012

overview

Window 2

Location 12,866,684 – 12,866,804
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -35.17
Consensus MFE -28.75
Energy contribution -30.00
Covariance contribution 1.25
Combinations/Pair 1.09
Mean z-score -1.38
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.512843
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12866684 120 + 27905053
AAAUGGUUAGAUCAUUGAAACUACUUAGGAACAAAAUAUAACACACUUUUCCAUAUAUAGGUGUUCAGCGGGCAGUCGAUCUGUGUGCUGCUCCUGGCAGCUGGUCCCAGGUGCUCUCUC
.((((((...)))))).........(((((............((((((..........)))))).(((((.((((.....)))).))))).)))))(((.(((....))).)))...... ( -31.50)
>DroSec_CAF1 36368 120 + 1
AAAUGGUUAGAUCAUUGAAACUACUUAGGAGCAAAAUAUAACACACUUUUCCAUAUAAAGGUGUUCAGCGGGCAGUCGAUCUGUGUGCUGCUCCUGGCAGCUGGUCCCAGGUGCUCUCUC
.((((((...)))))).........(((((((..........((((((((......))))))))..((((.((((.....)))).)))))))))))(((.(((....))).)))...... ( -38.30)
>DroSim_CAF1 37019 120 + 1
AAAUGGUAAGAUCAUUGAAAGUACUUGGGAGCAAAAUAUAACACACUCUUCCAUAUAAAGGUGUUCAGCGGGCAGUCGAUCUGUGUGCUGCUCCUGGCAGCUGGUCUCAGGUGCUCUCUC
.((((((...))))))((.(((((((((((.((.........((((.(((.......)))))))((((.(((((((((.....)).)))))))))))....)).))))))))))).)).. ( -36.80)
>DroYak_CAF1 36445 120 + 1
UAAUGGUAAGAGCAUUGAAACUACGUAGGAUCGAAAGCUAACACAUAUUAAAAUAUUAAGGUGUCCAGCGGGCAGUCGAUCUAUGUGCUGCUCCUGGCAGCUGGUCCCAGGUCCUCUCCC
....((..((..(.(((..(((((((((.(((((..(((.((((...((((....)))).))))......)))..)))))))))))(((((.....))))).)))..))))..))..)). ( -34.10)
>consensus
AAAUGGUAAGAUCAUUGAAACUACUUAGGAGCAAAAUAUAACACACUUUUCCAUAUAAAGGUGUUCAGCGGGCAGUCGAUCUGUGUGCUGCUCCUGGCAGCUGGUCCCAGGUGCUCUCUC
.((((((...)))))).........(((((((..........((((((((......))))))))..((((.((((.....)))).)))))))))))(((.(((....))).)))...... (-28.75 = -30.00 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:25 2006