Locus 4888

Sequence ID 3R_DroMel_CAF1
Location 12,854,677 – 12,854,768
Length 91
Max. P 0.929722
window7999

overview

Window 9

Location 12,854,677 – 12,854,768
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -36.50
Consensus MFE -22.43
Energy contribution -23.10
Covariance contribution 0.67
Combinations/Pair 1.25
Mean z-score -2.11
Structure conservation index 0.61
SVM decision value 1.20
SVM RNA-class probability 0.929722
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12854677 91 + 27905053
GCCUCCGCCACAGCACUGCAAUUGCCCGCCAGGUCCACCGGGGCCUCCUGGACCGCCGGGCUUACCAGGAACGCCUGGUCCGCAAGGUCCC
((((..((....))..(((....(((((...((((((..((.....))))))))..)))))..((((((....))))))..)))))))... ( -36.70)
>DroPse_CAF1 24378 91 + 1
GCCGCCCCCACAGCACUGCAACUGUCCGCCUGGCCCGCCCGGACCUCCAGGGCCUCCAGGGGCCCAAGGGCCUGCUGGCCAACCAGGUGCA
............(((((......(((.((..(((((....((....)).((((((....))))))..))))).)).)))......))))). ( -40.90)
>DroSim_CAF1 24680 88 + 1
---UCCGCCACAGCACUGUAAUUGCCCGCCAGGUCCACCGGGUCCUCCUGGACCACCGGGCUUACCCGGAACCCCUGGUCCGCAAGGUCCC
---...((((((....)))..((((..((((((....((((((...(((((....)))))...))))))....))))))..)))))))... ( -36.60)
>DroEre_CAF1 24242 88 + 1
---UCCGCCACAUCACUGUAAUUGCCCGCCGGGGCCACCGGGUCCUCCUGGACCACCGGGCUUACCAGGAACACCUGGUCCCCAAGGUCCC
---...........................((((((....(((((....)))))...(((...((((((....)))))).)))..)))))) ( -34.50)
>DroYak_CAF1 24364 88 + 1
---UCAACCACAGCACUGUAAUUGCCCGCCAGGGCCACCGGGUCCUCCAGGACCACCGGGCUUACCAGGAACCCCUGGUCCUCAAGGUCCC
---...(((..(((.........((((....))))..((((((((....))))..))))))).((((((....))))))......)))... ( -33.30)
>DroAna_CAF1 24379 91 + 1
ACUGCCGCCGCAGCAUUGCAAUUGUCCGCCGGGACCACCGGGUCCACCAGGACCUCCGGGUCUACCGGGAACACCUGGACCCCAGGGCUCA
.((((....))))....((...(((.(.((((((((...((((((....))))))...))))..))))).)))(((((...)))))))... ( -37.00)
>consensus
___UCCGCCACAGCACUGCAAUUGCCCGCCAGGGCCACCGGGUCCUCCAGGACCACCGGGCUUACCAGGAACACCUGGUCCCCAAGGUCCC
......(((..............(((((...((....)).(((((....)))))..)))))...(((((....))))).......)))... (-22.43 = -23.10 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:14 2006