| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,853,216 – 12,853,325 |
| Length | 109 |
| Max. P | 0.555411 |
| Location | 12,853,216 – 12,853,325 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -26.92 |
| Consensus MFE | -17.96 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12853216 109 + 27905053 ACAAUUCUACAGAACCAGAGUGGGCGAUCGCUUCUUCUUCGAAAACGGAGACAAGCUCACUGGAUUUACUCCUGGUAAAAAGAACAUUUCUCCUCUG-ACUAUUUUA----AAU .........((((((((.(((((((((.....)).((((((....))))))...)))))))(((.....)))))))....(((.....)))..))))-.........----... ( -24.70) >DroSec_CAF1 23131 109 + 1 ACAGUUCUACAGAACCAGAGUGGGCGAUCGUUUCUUCUUCGAAAACGGAGACAAGCUCACUGGAUUUACUCCCGGUAAGAACAACAUUUCUUCUCUG-ACUAAUUUA----AAU .........(((((((..(((((((((.....)).((((((....))))))...)))))))(((.....))).)))(((((......))))).))))-.........----... ( -25.60) >DroSim_CAF1 23228 109 + 1 ACAGUUCUACAGAACCAGGGUGGGCGAUCGUUUCUUCUUCGAAAACGGAGACAAGCUCACUGGAUUUACUCCCGGUAAAAACAGCAUUUCUUCUCUG-ACUAAUUAA----AAU ...((((....))))((((((((((((.....)).((((((....))))))...)))))(((..(((((.....)))))..)))........)))))-.........----... ( -25.80) >DroEre_CAF1 22744 108 + 1 ACAGUUCUUCAGGACCAGGGUGGGAGAUCGUUUCUUCUUCGAGAACGGAGACAAGCUCACCGGCUUUACGCCCGGUAAAU-CAACAUUUCUCCUGUC-ACUAACCAA----GAU .....((((..((...((((..(((((..((((..((((((....)))))).))))..((((((.....).)))))....-.......)))))..))-.))..))))----)). ( -28.90) >DroWil_CAF1 28730 108 + 1 ACAGUUCUACAGAACUCGUGUGGGAGAUCGAUUCUUCUUCGAAAAUGGCGACAAACUCACCGGUUUCACUCCAGGUUAAAUGGA--AUCCCAUUCU----UAAUUGCAAGUGAU ..(((((....)))))((.(((((...((((.......))))...((....))..)))))))...(((((...((((((((((.--...))))..)----)))))...))))). ( -26.20) >DroYak_CAF1 22883 109 + 1 ACAGUUCUACAGGACCAGGGUGGGAGAUCGUUUCUUCUUCGAAAACGGAGACAAGCUCACCGGAUUUACGCCCGGUAAAU-AAACCUUUCCUCUCUGGAAAAAUCAA----AAU ..............((((((.((((((..((((..((((((....)))))).))))..(((((........)))))....-.....)))))))))))).........----... ( -30.30) >consensus ACAGUUCUACAGAACCAGGGUGGGAGAUCGUUUCUUCUUCGAAAACGGAGACAAGCUCACCGGAUUUACUCCCGGUAAAAACAACAUUUCUUCUCUG_ACUAAUUAA____AAU ...((((....))))(((((.(((.....((((..((((((....)))))).))))..(((((........)))))............))).)))))................. (-17.96 = -17.97 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:13 2006