Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,852,886 – 12,852,976 |
Length | 90 |
Max. P | 0.620480 |
Location | 12,852,886 – 12,852,976 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -15.44 |
Consensus MFE | -12.92 |
Energy contribution | -12.12 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.38 |
Mean z-score | -1.32 |
Structure conservation index | 0.84 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12852886 90 + 27905053 CACCUUUCUAACCUCUCAACCUUUCCUGGCUUAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU ....(((((....(((.(((........((((.....)))).......))).)))))))).((((...(((....)))...))))..... ( -12.66) >DroSec_CAF1 22801 90 + 1 CACCUUUUUAACCUGUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUUUUCAGAAGAAACAUGCCCUUCGGUUCUGAUCUGCGUUCCCU ...........................(((.(((((((....((((.......))))......(((....)))..))))))).))).... ( -13.80) >DroSim_CAF1 22898 90 + 1 CACCUUUCUAACCUCUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU ...........................(((.((((((.....((((.......))))......(((....)))...)))))).))).... ( -13.30) >DroEre_CAF1 22414 90 + 1 CACCACUCUCACCUCUCAAAAUUUCCCGGCCUAGAUCAAACACUUCCUGUUCCGAAGGAACAUGCCCUUUGGUUCCGAUCUACGCUCCCU ...........................(((.((((((.((((.....))))(((((((.......)))))))....)))))).))).... ( -19.30) >DroYak_CAF1 22554 89 + 1 CACCUUUCUCAAUGCUG-ACCUUUCCUGGCCUAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCUUUUGGUUCCGAUCUGCGAUCCCU .............((((-........))))...((((..(((..((....(((((((........)))))))....))..)))))))... ( -13.60) >DroAna_CAF1 22553 88 + 1 UAUGAUUUGCAAUUCACA--AUUACUCGUUUCAGAUCAAGCACUUCUUGUUUAGGAGGAACAUGCCCUUCGGUUCGGAUCUGAGAUCUUU ..(((........)))..--.......(((((((((((((((.....))))).(((((.......)))))......)))))))))).... ( -20.00) >consensus CACCUUUCUAACCUCUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU ...........................(((.((((((.....((((.......))))......(((....)))...)))))).))).... (-12.92 = -12.12 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:12 2006