Locus 4885

Sequence ID 3R_DroMel_CAF1
Location 12,850,477 – 12,850,569
Length 92
Max. P 0.635451
window7996

overview

Window 6

Location 12,850,477 – 12,850,569
Length 92
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 80.69
Mean single sequence MFE -17.66
Consensus MFE -9.15
Energy contribution -9.95
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.52
SVM decision value 0.21
SVM RNA-class probability 0.635451
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12850477 92 - 27905053
AUCUGGGUAUUAUGUGUACUAU---------AUGGUAUUCGGCCUAAACCCC-------AUACUUUAAACACCGAACACCGAACACCAAACCCAACCCCGAGCUUAAA
...(((((.....((((.....---------.((((.(((((..((((....-------....))))....))))).)))).))))...))))).............. ( -15.90)
>DroSec_CAF1 20401 85 - 1
AUCUGGGUAUUAUGUGUACUAU---------AUGGUAUUCGGCCUAAAACCC-------AUACUUUAAACACCG-------AACACCAAACCCAACCCCGAGCUUAAA
.((.((((..((((.....)))---------)((((.(((((..((((....-------....))))....)))-------)).))))......)))).))....... ( -15.50)
>DroSim_CAF1 20493 92 - 1
AUCUGGGUAUUAUGUGUACUAU---------AUGGUAUUCGGCCUAAACCCC-------AUACUUUAAACACCGAACACCGAACACCAAACCCAACCCCGAGCUUAAA
...(((((.....((((.....---------.((((.(((((..((((....-------....))))....))))).)))).))))...))))).............. ( -15.90)
>DroEre_CAF1 20005 101 - 1
AUCUGGGUAUUAUGUGUACUAUACGUGUACUAUGGUAUUGGGCCAAAACGGCAUACCAAAUAGCAUAAGCACCAAA-------UAGCAAACCCAACCCCAAGCAUAAA
...(((((.((((((((((.......))))..((((((...(((.....)))))))))....))))))((......-------..))..))))).............. ( -25.30)
>DroYak_CAF1 20121 92 - 1
AUCUGGGUAUUAUGUGUACUAU---------AUGGUAUUGGGCUAAAACCCC-------AUAGUUUAAACACCGAACAGAAAACAACAAACCCAACCCCAAGCAUAAA
...(((((....(((...((.(---------.((((.((((((((.......-------.))))))))..)))).).))...)))....))))).............. ( -15.70)
>consensus
AUCUGGGUAUUAUGUGUACUAU_________AUGGUAUUCGGCCUAAACCCC_______AUACUUUAAACACCGAACA___AACACCAAACCCAACCCCGAGCUUAAA
...(((((.......((((((((.......))))))))((((.............................))))..............))))).............. ( -9.15 =  -9.95 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:11 2006