Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,847,167 – 12,847,277 |
Length | 110 |
Max. P | 0.916166 |
Location | 12,847,167 – 12,847,277 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.57 |
Mean single sequence MFE | -22.79 |
Consensus MFE | -10.94 |
Energy contribution | -10.10 |
Covariance contribution | -0.84 |
Combinations/Pair | 1.43 |
Mean z-score | -1.94 |
Structure conservation index | 0.48 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12847167 110 + 27905053 UAUGAUUUUAGUUGGCGGAAA-GAACACA--CAUUCUAUAAAGUUUA----UGUGGUAGCCACAACAUAGGCU--UUUAAGUAACAGUUAAAUCCAAAACCAAA-AGCCAAUAAAAAUCU ...((((((.(((((((((..-.(((...--....((..((((((((----(((.((....)).)))))))))--))..)).....)))...))).........-.)))))).)))))). ( -24.60) >DroSec_CAF1 16525 100 + 1 UAUGAUUUAAGUUGGCGGAAA-GAACAUA--CAUUCUACAAAGUUUA----UGUGGUAGCCAAUGUUUUGGUU------------AUUUAAAGCUAAAAGCAAA-AGUCUAUAAAAAUCU ...(((((..((((((.....-..(((((--.(((......))).))----)))....)))))).((((((((------------......))))))))....)-))))........... ( -17.70) >DroSim_CAF1 16705 97 + 1 UAUGAUUUAAGUUGGCGGAAA-GAACAUA--CAUUCUACAAAGUUUA----UGUGGUAGCCAAU---UCGGUU------------AUUUAAAGCCAAAACCAAA-AGUCAAUAAAAAUCU ...(((((..((((((((...-..(((((--.(((......))).))----))).....))...---..((((------------......)))).........-.))))))..))))). ( -19.00) >DroEre_CAF1 16730 115 + 1 UACGUUUUUAGUUGGCAGAAAAAGACAGA--CAUUAUGCCAAGUUAAGUUUGGUGGUAGCUAAAGUUUUUGUUGCUUUGAUUAACAAUUAAAGCG---ACCAAAAAACCAAUAAAAAGCU ...((((((.(((((.....((((((...--.....(((((((.....))))))).........))))))(((((((((((.....)))))))))---)).......))))).)))))). ( -27.83) >DroYak_CAF1 16744 115 + 1 UACGUUUUUAGUUGGUUGAGA-GCACAGGUCAAGUAUGUUAAGUUAAGUAUGGUGGUAGCUAAUGUUUCGGUUGUUUUAACUAACAAUUAAAGCG---ACCAAA-AAUCAAUAAAAAGCU ...((((((.((((((((...-.)...((((...................((((....))))..((((..((((((......))))))..)))))---)))...-))))))).)))))). ( -24.80) >consensus UAUGAUUUUAGUUGGCGGAAA_GAACAGA__CAUUCUACAAAGUUUA____UGUGGUAGCCAAUGUUUCGGUU__UUU_A_UAACAAUUAAAGCCAAAACCAAA_AGUCAAUAAAAAUCU ...((((((.((((((...................(((((...........))))).((((........)))).................................)))))).)))))). (-10.94 = -10.10 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006