Locus 4883

Sequence ID 3R_DroMel_CAF1
Location 12,844,538 – 12,844,643
Length 105
Max. P 0.511739
window7994

overview

Window 4

Location 12,844,538 – 12,844,643
Length 105
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 89.80
Mean single sequence MFE -23.18
Consensus MFE -18.12
Energy contribution -18.80
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.41
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.511739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12844538 105 - 27905053
CGCUGUUGCUAAAUGGAUUAUCACAUUUA----AUUGACUGCAUUCAGAUCAGAUCAGAUUGCAAUGGGUUUAUUAACUCAACGGUUGAACUAUGUAAAUGAAUAUGAA
.((.(((..((((((........))))))----...))).)).......(((..(((..(((((.((((((....))))))..((.....)).))))).)))...))). ( -18.40)
>DroSec_CAF1 13919 105 - 1
UGCUGUUGCUAAAUGGAUUAUCACAUUUA----AUUGACUGCAUUCAGAUCAGAUAAGAUCGCAAUGGGUUUAUUAACUCAUUGGUUGAACUAUGUAAAUGAAUAUGAU
.((.(((..((((((........))))))----...))).))(((((((((......)))).(((((((((....)))))))))...............)))))..... ( -24.10)
>DroSim_CAF1 14098 105 - 1
UGCUGUUGCUAAAUGGAUUAUCACAUUUA----AUUGACUGCAUUCAGAUCAGAUAAGAUCGCAAUGGGUUUAUUAACUCAUUGGUUGAACUAUGUAAAUGAAUAUGAU
.((.(((..((((((........))))))----...))).))(((((((((......)))).(((((((((....)))))))))...............)))))..... ( -24.10)
>DroEre_CAF1 14164 109 - 1
UGCUGUUGCUAAAUGGAUUAUCACAUUUACAUGAAUGACAGCAUUCAGAUCAGAUAAGAUCGCAAUGGGUUUAUUAGCUCAUUGGCUGAAAUAUGAACAUGAAUAUGAA
..(((((((((((((........))))))..((((((....))))))((((......)))))))))))(((((((((((....))))))....)))))........... ( -26.40)
>DroYak_CAF1 14085 109 - 1
UGCUGUUGCUAAAGGGAUUAUCACAUUUACAUGAAUGACUGCAUUCAGAUCAGAUAAGAUCGCAAUGGGUUUAUUAACUCACUAGUUGGAGAAUAAACAUGAAUAUGAA
..(((((((......................((((((....))))))((((......)))))))))))(((((((..(((.(.....)))))))))))........... ( -22.90)
>consensus
UGCUGUUGCUAAAUGGAUUAUCACAUUUA____AUUGACUGCAUUCAGAUCAGAUAAGAUCGCAAUGGGUUUAUUAACUCAUUGGUUGAACUAUGUAAAUGAAUAUGAA
.((.(((..((((((........)))))).......))).))(((((((((......)))).(((((((((....)))))))))...............)))))..... (-18.12 = -18.80 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:09 2006