Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,843,546 – 12,843,644 |
Length | 98 |
Max. P | 0.867809 |
Location | 12,843,546 – 12,843,644 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -18.55 |
Energy contribution | -19.72 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.22 |
Mean z-score | -1.82 |
Structure conservation index | 0.57 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12843546 98 - 27905053 -GAGGCUGCAGACAAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GCU-ACUUGCUACUUGCUACUUGCUGCUGC -...((.((((.(((....((((((((((((.((-(((....))).))((((....)))).....))).))-)))-))))((.....))...))))))).)) ( -34.40) >DroSec_CAF1 12944 84 - 1 -GCGGCUGCAGAUCAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GC---------------UACUUGCUGCUGC -(((((.((((........(((((((((....((-(((....))).))((((....))))..)))))))))-..---------------...)))).))))) ( -33.82) >DroSim_CAF1 13098 91 - 1 -UCGGCUGCGGAUCAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GCU-ACU-------UGCUACUUGCUGCUGC -.((((.((((.....)).((((((((((((.((-(((....))).))((((....)))).....))).))-)))-)))-------).......)).)))). ( -32.70) >DroEre_CAF1 13118 91 - 1 -GCGGUUGCGGACUAACUAAAGUGGUAAUGGGCG-CCGAUUAUGGACGGGCCAUGUGGCCACUUGCCGCUU-GCC-ACU-------UGCCAGUUGCUGCUGC -(((((.(((.(((.....(((((((((..(((.-(((........))))))..(((((.....)))))))-)))-)))-------)...)))))).))))) ( -38.00) >DroYak_CAF1 13070 77 - 1 -GCGGUUGCGGACCAACUAAAGUGGUAAUGGACG-CCAAUUAUGGACGAGCCAUGUGGCCACUUGCC-----------------------ACUUGCUGCUGC -(((((.(((......)..(((((((((.(...(-(((..(((((.....)))))))))..))))))-----------------------)))))).))))) ( -28.10) >DroAna_CAF1 13206 88 - 1 GGCGGCUGCCGGCCAACUGAAGUUGUAAUGGGGGACCAAUUAUGGCCU--CAAUGUGUUGUCUUAGC--UUGGCUAACU-------GGCUAC---CAACAGC ...((..(((((.(((((((.((..((((((....)).))))..)).)--))....))))..(((((--...)))))))-------)))..)---)...... ( -28.70) >consensus _GCGGCUGCGGACCAACCAAAGUGGUAAUGGACG_CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU_GCU_ACU_______UGCUACUUGCUGCUGC .(((((.((((........(((((((.((((.((.(((....))).))..))))...)))))))((......))..................)))).))))) (-18.55 = -19.72 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:06 2006