Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,841,709 – 12,841,815 |
Length | 106 |
Max. P | 0.997508 |
Location | 12,841,709 – 12,841,815 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -16.34 |
Energy contribution | -17.46 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.88 |
Structure conservation index | 0.58 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12841709 106 - 27905053 UCAAUGUGGUUUUUUCGAUUUUGGUUUUAAUGAUUUUAAUUU--UUUUUUUAGAUUUUAGUUGAAUGGAAACCUUUGUCGAAAGACCCGCAAUGGUAGCCUGAAGGUC (((.(((((.(((((((((...((((((..(((((..(((((--.......)))))..)))))....))))))...))))))))).))))).)))..(((....))). ( -29.00) >DroSec_CAF1 11002 107 - 1 UCAAUGUGGUUU-UUCGGUUUUGGUUUUAAUGUUUUUUUUUAAAUUUUUUUGGUUUUUAGUUGAAUGGAAACCUUUGUCGAAAGACCCGCAAUGGAAGCCUGAAGGUC (((.((((((((-(((((....((((((...((((..((..(((((.....)))))..))..)))).))))))....)))))))).))))).)))..(((....))). ( -26.20) >DroEre_CAF1 11170 83 - 1 UCAAUGUGGUU--UUCGGCUU-GGU----------------------UUUCAGUUUUUGGUCGACUGGAAACCUUUUUCGAAAGACCCGCUAUGGCAGCCUGAAGGUC .......(..(--(((((((.-(((----------------------((((((((.......)))))))))))....((....))...((....)))))).))))..) ( -25.30) >DroYak_CAF1 11062 84 - 1 UCAAUGUGGUUU-UUCGGAAU-GGU----------------------UUUCAGUUUUUGGUCGACUGGAAACCUUUGUCGAAAGACCCGCAAUGGAAGCCUGAAGGUC (((.((((((((-(((((...-(((----------------------((((((((.......)))))))))))....)))))))).))))).)))..(((....))). ( -32.10) >consensus UCAAUGUGGUUU_UUCGGUUU_GGU______________________UUUCAGUUUUUAGUCGAAUGGAAACCUUUGUCGAAAGACCCGCAAUGGAAGCCUGAAGGUC (((.(((((.((.((((((...(((......................((((((((.......)))))))))))...)))))).)).))))).)))..(((....))). (-16.34 = -17.46 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:05 2006