Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,829,339 – 1,829,453 |
Length | 114 |
Max. P | 0.586925 |
Location | 1,829,339 – 1,829,453 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -42.40 |
Consensus MFE | -33.52 |
Energy contribution | -33.53 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.17 |
Mean z-score | -1.63 |
Structure conservation index | 0.79 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1829339 114 + 27905053 UCUUUC------GGCCGCAAACUACGGUGUAUAUUCUACGCCGCUGCGAGAGCAAACUUACCUAGUCCACGGGCCGCCACAUCGGUGGCCACCAGAAUGUUGGACUUGCCCGAGCGGAAC ......------..((((..(((((((((((.....))))))).(((....)))........))))...(((((.(((((....)))))..((((....))))....))))).))))... ( -42.30) >DroSim_CAF1 123 120 + 1 UCAUUCGCCUCUGGCCGCAAACUACGGUGUGUAUUCUACGCCGCUGCGAGAGCAAACUUACCCAGUCCACGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUGCCCGAGCGGAAC ...(((((.((.(((.........(((((((.....))))))).(((....))).......(((((((...(((((((.....)))))))....))))..)))....))).))))))).. ( -46.50) >DroYak_CAF1 235 118 + 1 UAAUAUUCUUCCGGCUGCGAACUACUUUGUGUCU--UAAAACGAUGCGGGAACAAACUUACCCAGUCCUCGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUUCCCGAGCGGAAC ........(((((((.(((((....)))))))).--......(...((((((........((..(((((.((((((((.....))))))).).)))))...))...))))))..))))). ( -38.40) >consensus UCAUUC_C_UC_GGCCGCAAACUACGGUGUGUAUUCUACGCCGCUGCGAGAGCAAACUUACCCAGUCCACGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUGCCCGAGCGGAAC ..............((((......(((((((.....)))))))..(((((..(((.........((((...(((((((.....)))))))....)))).)))..)))))....))))... (-33.52 = -33.53 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:25 2006