Locus 488

Sequence ID 3R_DroMel_CAF1
Location 1,829,339 – 1,829,453
Length 114
Max. P 0.586925
window788

overview

Window 8

Location 1,829,339 – 1,829,453
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -42.40
Consensus MFE -33.52
Energy contribution -33.53
Covariance contribution 0.01
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.79
SVM decision value 0.11
SVM RNA-class probability 0.586925
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1829339 114 + 27905053
UCUUUC------GGCCGCAAACUACGGUGUAUAUUCUACGCCGCUGCGAGAGCAAACUUACCUAGUCCACGGGCCGCCACAUCGGUGGCCACCAGAAUGUUGGACUUGCCCGAGCGGAAC
......------..((((..(((((((((((.....))))))).(((....)))........))))...(((((.(((((....)))))..((((....))))....))))).))))... ( -42.30)
>DroSim_CAF1 123 120 + 1
UCAUUCGCCUCUGGCCGCAAACUACGGUGUGUAUUCUACGCCGCUGCGAGAGCAAACUUACCCAGUCCACGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUGCCCGAGCGGAAC
...(((((.((.(((.........(((((((.....))))))).(((....))).......(((((((...(((((((.....)))))))....))))..)))....))).))))))).. ( -46.50)
>DroYak_CAF1 235 118 + 1
UAAUAUUCUUCCGGCUGCGAACUACUUUGUGUCU--UAAAACGAUGCGGGAACAAACUUACCCAGUCCUCGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUUCCCGAGCGGAAC
........(((((((.(((((....)))))))).--......(...((((((........((..(((((.((((((((.....))))))).).)))))...))...))))))..))))). ( -38.40)
>consensus
UCAUUC_C_UC_GGCCGCAAACUACGGUGUGUAUUCUACGCCGCUGCGAGAGCAAACUUACCCAGUCCACGGGCCGCCACAUCGGUGGCCACCAGGAUGUUGGACUUGCCCGAGCGGAAC
..............((((......(((((((.....)))))))..(((((..(((.........((((...(((((((.....)))))))....)))).)))..)))))....))))... (-33.52 = -33.53 +   0.01) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:25 2006