Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,837,286 – 12,837,388 |
Length | 102 |
Max. P | 0.643833 |
Location | 12,837,286 – 12,837,388 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -39.95 |
Consensus MFE | -28.93 |
Energy contribution | -29.79 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.16 |
Mean z-score | -2.03 |
Structure conservation index | 0.72 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12837286 102 + 27905053 A------AUGGCCGGGACACGGAGUCGCUGGCCUCAAUGGCUUUGACGGAGAACGGCGGCGAGGAGGCCAUUCCUCCUCCGCUGUACCGCAACACAAUGGCCAUGUAU .------..(((((((((.....))).))))))...(((((((((.(((...(((((((..((((((.....))))))))))))).))))))......)))))).... ( -46.30) >DroVir_CAF1 8863 102 + 1 AAUCGGAAUGCUCGCGAUAAUGAAUCGUUGGCCUCUGUAUCUAU---GGAGAACGGAGAAGGAGAGAACAA---UAAUCCGCUUUAUCGUAAUACGAUGGCGAUGUAU .((((((..(((.(((((.....))))).)))((((((.(((..---..))))))))).............---...)))(((..((((.....)))))))))).... ( -27.10) >DroSec_CAF1 6648 99 + 1 A------AUGGCCGGGACACGGAGUCGCUGGUCUCGAUGGCUUUGACGGAGAACGGCGGCGAGGAGGUUAA---UCCUCCGCUGUACCGCAACACAAUGGCCAUGUAU .------(((((((((((.(((.....))))))))..((...(((.(((...(((((((..((((......---))))))))))).))))))..))..)))))).... ( -40.40) >DroSim_CAF1 6851 99 + 1 A------AUGGCCGGGACACGGAGUCGCUGGCCUCGAUGGCUUUGACGGAGAACGGCGGCGAGGAGGUUAA---UCCUCCGCUGUAUCGCAACACAAUGGCCAUGUAU .------..(((((((((.....))).))))))...(((((((((...(.(((((((((..((((......---))))))))))).)).)....))).)))))).... ( -40.10) >DroEre_CAF1 6770 99 + 1 A------AUGGCCGGGACACGGAGUCGCUGGCCUCCAUGGCUUUGACGGAGAACGGCGGCGAGGAGGUGAG---UCCUCCGCAGUACCGCAACACCAUGGCCAUGUAU .------(((((((((...(((.(((((((..((((...........))))..)))))))(.(((((....---.))))).)....))).....)).))))))).... ( -43.90) >DroYak_CAF1 6872 99 + 1 A------AUGGCCGGGACACGGAGUCGCUGGCCUCGAUGGCUUUGACGGAGAACGGCGGCGAGGAGGUCAA---UCCUCCGCUGUACCGCAACACCAUGGCCAUGUAU .------(((((((((...(((.((((..((((.....)))).)))).....(((((((..((((......---))))))))))).))).....)).))))))).... ( -41.90) >consensus A______AUGGCCGGGACACGGAGUCGCUGGCCUCGAUGGCUUUGACGGAGAACGGCGGCGAGGAGGUCAA___UCCUCCGCUGUACCGCAACACAAUGGCCAUGUAU .......(((((((.....(((.(((((((..(((.............)))..)))))))..(((((........)))))......)))........))))))).... (-28.93 = -29.79 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:03 2006