Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,833,182 – 12,833,283 |
Length | 101 |
Max. P | 0.590288 |
Location | 12,833,182 – 12,833,283 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -18.86 |
Energy contribution | -19.10 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.10 |
Mean z-score | -1.90 |
Structure conservation index | 0.74 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12833182 101 + 27905053 ACUGUAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAGUAGUAG-------UCAUUAAAAGGCAAGAAUGUCACAAUUUGCUCCAAUAAAAGUUAUUGGCCAAUAAA ..........((...(((((((..(((((((((.....)))))))-------.))..)))))))...................((((((.....))))))))...... ( -20.00) >DroSec_CAF1 2679 108 + 1 AAUGUAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAAUAGUGGCCAAACGUCAUUAAACGGCAAGAAUGUCACAAUUGGCUCCAAUAAAAGUUAUUGGCCAAUAAA ....((((((.(((((((.((((.(((....))).)))).))))))).....))))))...((((....))))...((((((..(((((.....)))))))))))... ( -28.10) >DroSim_CAF1 2750 108 + 1 ACUGUAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAAUAGUGGCCAAACGUUAUUAAACGGCAAGAAUGUCACAAUUGGCUCCAAUAAAAGUUAUUGGCCAAUAAA ...((((((..(((((((.((((.(((....))).)))).)))))))...)))))).....((((....))))...((((((..(((((.....)))))))))))... ( -28.40) >DroEre_CAF1 2743 108 + 1 ACUGCAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAAUAGUGGCCAAACCUCAUUAAACGGCAAGAAUGUCACAAUUAGCUCCAAUAAAAGUUAUUGCCCAAUGAA .....(((((((((((((.((((.(((....))).)))).))))))....)))))))....((((((.....).....(((((........))))))))))....... ( -24.10) >DroYak_CAF1 2709 108 + 1 ACUGCAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAAUAGUGGCCAAACCUCAUUAAAUGGCAAGAAUGUCACAAUUAGCUCCAAUAAAAGUUAUUGGCCAAUAAA ...(((((((((((((((.((((.(((....))).)))).))))))....)))))))...(((((....)))))......)).((((((.....))))))........ ( -26.50) >consensus ACUGUAAUGAGGGUCGCUUUUUUCUGUUAUUACGUGAAAUAGUGGCCAAACCUCAUUAAACGGCAAGAAUGUCACAAUUAGCUCCAAUAAAAGUUAUUGGCCAAUAAA ...(((((((.(((((((.((((.(((....))).)))).))))))).....)))))....((((....)))).......)).((((((.....))))))........ (-18.86 = -19.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:02 2006