Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,830,397 – 12,830,517 |
Length | 120 |
Max. P | 0.810911 |
Location | 12,830,397 – 12,830,517 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -32.76 |
Energy contribution | -32.56 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -1.57 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12830397 120 + 27905053 AAACCACUUCCGGAGGGCAGUAGCUUGCGAACUGAGUGUGAGAACUCACUCAAGGGAAAUCGAGAGGGUCACUAUGCUUUCAGAAGGCUACUUGGGAGCAGCCACUACAGGAACGGUUUC (((((..((((..((((((((..(((.(((.(((((((........))))).)).....)))...)))..))).((((..(((........)))..))))))).))...)))).))))). ( -38.10) >DroSec_CAF1 7643 120 + 1 AAACCACUUCCGGUGGGCAGUAGUUUGCGAACCGAGUGUGAAAAUUCGCUCAAGGGAAACCAGGAGGGUCACCAUGCCUUCAGGAGGCUACUCGGGAGUAGCCACUAUAGGAACGGUUUC (((((.((((((((..((((....))))..)))(((((........)))))..((....)).))))).........(((..((..(((((((....))))))).))..)))...))))). ( -47.20) >DroSim_CAF1 6589 120 + 1 AAACCACUUCCGGUGGGCAGUAGUUUGCGAACCGAGUGUGAAAAUUCGCUCAAAGGAAACCGGGAGGGUCACCAUGCCUUCAGGAGGCUACUCGGGAGCAGCCACUACAGGAACGGUUUC (((((..((((.(((((.((((((((.(...(((((((........)))))...(....).))((((((......)))))).).)))))))))((......)).)))).)))).))))). ( -40.60) >DroEre_CAF1 7765 120 + 1 AAACCACUUCCCGAGGGCAGUAGUUUGCGCACCGAGUGUGAAAACUCGCUCACGGGAAACGGGGAGGGUCACCAUGCCUUCAGGAGGCUACUUGGGAGCAGCCACUACAGGGACGGUUUC (((((.(((((((.(.((((....)))).).(((.(.((((....)))).).)))....))))))).(((.((...((....)).((((.((....)).))))......)))))))))). ( -44.50) >DroYak_CAF1 7822 120 + 1 AAACCACUUCCAGAGGGCAGUAGUUUACGAACGGAGUGUGAAAACUCGCUCAAGGGAAACCGAGAGGGUCACCAUGCUUUUAGGAGGCUACUUGGUAGCAGCCACUACAGGAAUGGAUUC ...(((.((((..(((((((((((((.(....((((((((...((((.(((..((....))))).))))...))))))))..).))))))))((....))))).))...))))))).... ( -38.10) >consensus AAACCACUUCCGGAGGGCAGUAGUUUGCGAACCGAGUGUGAAAACUCGCUCAAGGGAAACCGGGAGGGUCACCAUGCCUUCAGGAGGCUACUUGGGAGCAGCCACUACAGGAACGGUUUC (((((..((((..(((((((((((((.(.....(((((........)))))..((....))..((((((......)))))).).)))))))).(....).))).))...)))).))))). (-32.76 = -32.56 + -0.20)
Location | 12,830,397 – 12,830,517 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -38.76 |
Consensus MFE | -33.64 |
Energy contribution | -33.60 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.23 |
Mean z-score | -1.48 |
Structure conservation index | 0.87 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12830397 120 - 27905053 GAAACCGUUCCUGUAGUGGCUGCUCCCAAGUAGCCUUCUGAAAGCAUAGUGACCCUCUCGAUUUCCCUUGAGUGAGUUCUCACACUCAGUUCGCAAGCUACUGCCCUCCGGAAGUGGUUU .((((((((((.((((((((((((....))))))).......(((...((((....(((((......)))))(((((......)))))..))))..)))))))).....)))).)))))) ( -35.00) >DroSec_CAF1 7643 120 - 1 GAAACCGUUCCUAUAGUGGCUACUCCCGAGUAGCCUCCUGAAGGCAUGGUGACCCUCCUGGUUUCCCUUGAGCGAAUUUUCACACUCGGUUCGCAAACUACUGCCCACCGGAAGUGGUUU ...(((((.(((.(((.(((((((....)))))))..))).))).)))))((((.....))))........(((((((.........)))))))((((((((.((....)).)))))))) ( -39.90) >DroSim_CAF1 6589 120 - 1 GAAACCGUUCCUGUAGUGGCUGCUCCCGAGUAGCCUCCUGAAGGCAUGGUGACCCUCCCGGUUUCCUUUGAGCGAAUUUUCACACUCGGUUCGCAAACUACUGCCCACCGGAAGUGGUUU ...(((((.(((.(((.(((((((....)))))))..))).))).)))))((((((.(((((.......(((.(........).)))((...(((......)))))))))).)).)))). ( -41.20) >DroEre_CAF1 7765 120 - 1 GAAACCGUCCCUGUAGUGGCUGCUCCCAAGUAGCCUCCUGAAGGCAUGGUGACCCUCCCCGUUUCCCGUGAGCGAGUUUUCACACUCGGUGCGCAAACUACUGCCCUCGGGAAGUGGUUU ...(((((.(((.(((.(((((((....)))))))..))).))).)))))........((((((((((.(.((.(((((.(.(((...))).).)))))...)).).))))))))))... ( -44.10) >DroYak_CAF1 7822 120 - 1 GAAUCCAUUCCUGUAGUGGCUGCUACCAAGUAGCCUCCUAAAAGCAUGGUGACCCUCUCGGUUUCCCUUGAGCGAGUUUUCACACUCCGUUCGUAAACUACUGCCCUCUGGAAGUGGUUU ((((.(((.(...(((.(((((((....)))))))..)))...).)))((((....((((.((......)).))))...)))).....))))..((((((((.((....)).)))))))) ( -33.60) >consensus GAAACCGUUCCUGUAGUGGCUGCUCCCAAGUAGCCUCCUGAAGGCAUGGUGACCCUCCCGGUUUCCCUUGAGCGAGUUUUCACACUCGGUUCGCAAACUACUGCCCUCCGGAAGUGGUUU ...(((((.(((.(((.(((((((....)))))))..))).))).)))))((((((.((((........((((((((......)))).))))(((......)))...)))).)).)))). (-33.64 = -33.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:01 2006