Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,819,243 – 12,819,363 |
Length | 120 |
Max. P | 0.606720 |
Location | 12,819,243 – 12,819,363 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -28.40 |
Energy contribution | -28.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.92 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12819243 120 - 27905053 AAGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAAGUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG ..................((((((((...(((.((((((((((......)))).(((..((((((...((((....))))...))))))..)))..)).)))))))......)))))))) ( -33.60) >DroSec_CAF1 194570 120 - 1 AGGGAAAAGUGUUUAUGUCCAAGUUUACGUUGCGAUCCAGGAUUAACGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG ..................((((((((..((..((((...((((......)))).(((..((((((...((((....))))...))))))..)))))))..))((.....)).)))))))) ( -32.40) >DroSim_CAF1 196856 120 - 1 AGGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUUAAAUCGAGAAACUUGG ..................((((((((.((....((((((((((......)))).(((..((((((...((((....))))...))))))..)))..)).)))).....))..)))))))) ( -32.00) >DroEre_CAF1 203003 120 - 1 AGGGAAAGGUGUUAAUAUCCAGGUUCACGUUGCGGUCCAGAAUUAAAGUGUCCAGAUCCUCGAAGAAGGAGAGAAAUCUAAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG ..................(((((((((((.((...(((..................((((......))))..((((((...)))))))))...)).)))))(((.....)))..)))))) ( -25.00) >consensus AGGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG ..................((((((((..((..((((...((((......)))).(((..((((((...((((....))))...))))))..)))))))..))((.....)).)))))))) (-28.40 = -28.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006