Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,818,234 – 12,818,354 |
Length | 120 |
Max. P | 0.752293 |
Location | 12,818,234 – 12,818,354 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -26.11 |
Energy contribution | -26.30 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12818234 120 - 27905053 GCUGAACGCUUGGUAUACUAUUUAGUUAUUGGUUUACCGAACUACUUAUCCAGUUAGGAGUACGUUUGGUAAGAGGGUUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU .((((....((((((.((((.........)))).))))))(((.((((......)))))))..((((((((((((((..(((((.......))))).))))))))))))))))))..... ( -34.30) >DroSec_CAF1 193533 120 - 1 GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUAGGAGUACUUUCGGUAAGAGGGCUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU .((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... ( -28.60) >DroSim_CAF1 195809 120 - 1 GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUGGGAGUACUUUCGGUAAGAGGGUUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU .((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... ( -28.30) >DroEre_CAF1 201934 119 - 1 CCUGAACGCUUGGUAUACCAUUUAGUUGUUGGUUAACCGAGCUCCUUAUCAAGUUAGGAGUACUUUCAGUAAGAGGGCGUAAGGUGUU-UUUCCUAUCUCUUUUAUCAAACUCAGAAGCU .(((((((((((((..((((.........))))..)))))))((((.........)))))).......(((((((((.(((.((....-...)))))))))))))).....))))..... ( -29.70) >consensus GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUAGGAGUACUUUCGGUAAGAGGGCUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU .((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... (-26.11 = -26.30 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:54 2006