Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,817,343 – 12,817,462 |
Length | 119 |
Max. P | 0.632302 |
Location | 12,817,343 – 12,817,462 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -40.62 |
Consensus MFE | -29.38 |
Energy contribution | -30.00 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.21 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12817343 119 + 27905053 CGCACUUUUCAUUCAUGGCCCCGUUUUUUGGGUCCACGGA-AACCGGGCGAUUGGGAGCAACCCACUGACGUGGUCUGCACCUGUUUGAAGCCGGGAAAAGCCAAAAACUCACCCGACCA ....((((((.(((.(((.((((.....)))).))).)))-..((((.(((..(((.(((..((((....))))..))).)))..)))...))))))))))................... ( -39.20) >DroSim_CAF1 194115 120 + 1 GGCACUUUUCAUUCAUGGCCCCAUUUUUUGGGUCCACGGAAAACCGGACGAUUGGGAGCAACCCACUGACGUGGUCUGCACCCCUUUGGAGCCUGGAAAGGCUUAAAACUCACCCGUCCA ((...(((((.....(((.((((.....)))).)))..)))))))(((((...(((.(((..((((....))))..))).))).....((((((....))))))..........))))). ( -46.70) >DroEre_CAF1 200827 119 + 1 GGCACUUUUCAUACAUGCCCUCAUUUUUUAGGUCCACGGAAGCCCGGACGAUUGGGAGCAAC-CACUGACGUGGUCUGCACCUGCUUGGAGCCGGGAAAAGCCGAAAACUCACCCGACCA ((((...........))))...........((((...((...(((((.(((..(((.(((((-(((....))))).))).)))..)))...))))).....))((....))....)))). ( -38.70) >DroYak_CAF1 193379 119 + 1 GGCACUUUUCAUUCAUGCCCCCAUUUUUUGGGUCCACGGAAAACCGGAUGAUUGGUAGCAAC-CACUGACGUGGUCUGUACCCGCUUGGAGUCGGGAAAAGGCGAAAACUCACCCGACCA ((((((..((((((.((..((((.....))))..)).((....))))))))..))).(((((-(((....))))).)))....)))..(.((((((...((.......))..))))))). ( -37.90) >consensus GGCACUUUUCAUUCAUGCCCCCAUUUUUUGGGUCCACGGAAAACCGGACGAUUGGGAGCAAC_CACUGACGUGGUCUGCACCCGCUUGGAGCCGGGAAAAGCCGAAAACUCACCCGACCA ....((((((.(((.(((.((((.....)))).))).)))...((((.(((..(((.(((..((((....))))..))).)))..)))...))))))))))................... (-29.38 = -30.00 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:53 2006