Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,817,143 – 12,817,263 |
Length | 120 |
Max. P | 0.751650 |
Location | 12,817,143 – 12,817,263 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.19 |
Mean single sequence MFE | -50.30 |
Consensus MFE | -50.55 |
Energy contribution | -50.30 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 1.00 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12817143 120 - 27905053 AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGAUACGGCUCGCUUUGACA ..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -49.00) >DroSim_CAF1 193915 120 - 1 AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCGUUGGAUACGGCUCGCUUUGACA ..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -49.00) >DroEre_CAF1 200627 120 - 1 AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUCGACA ..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -51.60) >DroYak_CAF1 193180 120 - 1 AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCAGAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUUGACA ..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -51.60) >consensus AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUUGACA ..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... (-50.55 = -50.30 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:52 2006