Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,816,401 – 12,816,521 |
Length | 120 |
Max. P | 0.573905 |
Location | 12,816,401 – 12,816,521 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -36.06 |
Energy contribution | -36.06 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.09 |
Structure conservation index | 0.93 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12816401 120 + 27905053 CAACUUUUGCAGCUCCUUCCGUUUGGAGCUCACGGCUCGAGAGUUGUCCAAAUGGUUGCAGCACAAGUAAAUGCCAUAAAGGGCCCUCAAGUUAUGCGGAUUAAGCUUCAGGGCCUGCGA ..((((.(((.((.....(((((((((((((.((...)).))))..)))))))))..)).))).))))............(((((((.(((((..........))))).))))))).... ( -41.10) >DroSec_CAF1 191257 120 + 1 UAACUUUUGCAGCUCCUUCCGCUUGGAGCUUACAGCUCGGGAAUUGUCCAAUUGGUUGCAGCACAGGUAAAUGCCAUAAAGGGCCCUCAAGUUAUGCGGAUUAAGCUUCAGGGCCUGCGA ..((((.(((((((((........))))))..(((((..(((....)))....)))))..))).))))............(((((((.(((((..........))))).))))))).... ( -38.50) >DroSim_CAF1 193171 120 + 1 UAACUUUUGCAGCUCCUUCCGCUUGGAGCUUACAGCUCGGGAGUUGUCCAAAUGGUUGCAGCACAGGUAAAUGCCAUAAAGGGCCCUCAAGUUAUGCGGAUUAAGCUUCAGGGCCUGCGA (((((((((((((((((........((((.....))))))))))))..)))).)))))..((...(((....))).....(((((((.(((((..........))))).))))))))).. ( -39.40) >DroEre_CAF1 199884 120 + 1 CAACUUUUGCAGCUCCUUUCGCUUGGAGCUCACAGCUCGGGAGUUGUCCAAAUGGUUGCAGCACAAGUAAAUGCCAUAAAGGGCCCUCAAGUUAUGCGGGUUAAGCUUCAGGGCCUGCGA ..((((.(((((((((........))))))..(((((..(((....)))....)))))..))).))))............(((((((.(((((..........))))).))))))).... ( -38.70) >DroYak_CAF1 192460 120 + 1 CAACUUCUGCAGCUCCUUUCGCUUGGAGCUCACAGCUCGGGAGUUGUCCAAGUGGUUGCAGCACAAGUAAAUUCCAUAAAGGGCCCUCAAGUUAUGCGGGUUAAGCUUCAGCGCCUGCGA .......((((((......((((((((((((.(......)))))..))))))))((((.(((...........((.....))((((.((.....)).))))...))).))))).))))). ( -35.80) >consensus CAACUUUUGCAGCUCCUUCCGCUUGGAGCUCACAGCUCGGGAGUUGUCCAAAUGGUUGCAGCACAAGUAAAUGCCAUAAAGGGCCCUCAAGUUAUGCGGAUUAAGCUUCAGGGCCUGCGA ..((((.(((((((((........))))))..(((((..(((....)))....)))))..))).))))............(((((((.(((((..........))))).))))))).... (-36.06 = -36.06 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:48 2006