Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,815,322 – 12,815,421 |
Length | 99 |
Max. P | 0.600982 |
Location | 12,815,322 – 12,815,421 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -26.39 |
Energy contribution | -26.28 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.31 |
Mean z-score | -1.49 |
Structure conservation index | 0.75 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12815322 99 - 27905053 AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA ....................(((((((((...((((..(((((...(((.(((---------------------((.....))))))))....)))))......)))).))))))).)). ( -35.50) >DroGri_CAF1 324347 120 - 1 CACCCCGUCGAGGAACUUCAGAUUGGGUAGCACCUGGAGUAUAUAUUCCCGGAAAUAGGAGGCGGAUGUGGAUUUGCCUUGACCCUUGAAGACUGUCUGAAUUCCCGGAUUGCCCAUGCA .......(((.((((.(((((((.((((....((.(((((....))))).))......(((((((((....))))))))).)))).........))))))))))))))..(((....))) ( -36.70) >DroSec_CAF1 190202 99 - 1 AAGUCCAUCGAGGUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUAUUUGGCCCCCGAAAACAGUGCGGAUGCCAGGAUUUCCCAUGCA ((((((.....)).))))..(((((((((...((((..((((.((((((.(((---------------------((.....)))))))).....)))...)))))))).))))))).)). ( -30.70) >DroSim_CAF1 192092 99 - 1 AAGUCCAUCGAGGUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUUCCCAUGCA ((((((.....)).))))..(((((((((...((((..(((((...(((.(((---------------------((.....))))))))....)))))......)))).))))))).)). ( -32.90) >DroEre_CAF1 198839 99 - 1 AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGCAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACAGUGCGGAUGCCAGGAUUCCCCAUGCA ....................((((((((....((((((((....))).)))))---------------------(((((.(((..(((.........)))..)))))))))))))).)). ( -37.10) >DroYak_CAF1 191330 99 - 1 AAGUCCAUCAAGAUAUUUUAGCUGGGGAAGCACCUGCAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA ....................((((((((....((((((((....))).)))))---------------------(((((.(((..(((.........)))..)))))))))))))).)). ( -37.10) >consensus AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG_____________________GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA ....................(((((((((...((((((((....))).)))))........................((((((..(((.........)))..)))))).))))))).)). (-26.39 = -26.28 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006