Locus 4863

Sequence ID 3R_DroMel_CAF1
Location 12,793,267 – 12,793,363
Length 96
Max. P 0.620780
window7966

overview

Window 6

Location 12,793,267 – 12,793,363
Length 96
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 77.19
Mean single sequence MFE -25.24
Consensus MFE -10.81
Energy contribution -12.34
Covariance contribution 1.53
Combinations/Pair 1.12
Mean z-score -2.15
Structure conservation index 0.43
SVM decision value 0.18
SVM RNA-class probability 0.620780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12793267 96 - 27905053
AAAUCUGAUAUCAUUCGGCGUCCGUAAAGAA-------AAAUAAAGAGGGAACCCUCGGUUUUUUUAUGGCCAAG---GGGUCGUUGAGAUUGUGAAGCAGAAUUU
...((((...((((((((((.((((((((((-------(......((((....))))..)))))))))))((...---.)).))))))....))))..)))).... ( -27.50)
>DroPse_CAF1 177713 91 - 1
AAAUCUGAUAUGAUUCGGCGUCCGUAAAA-A-------GAAUAAAGAGGGA-CCCUC--UUU-UUUACGGCCACC---GAGUCGUUGAGAUUGUGAAACAGAAUUU
.(((((.(.(((((((((.(.((((((((-(-------......(((((..-.))))--)))-))))))).).))---)))))))).))))).............. ( -31.40)
>DroGri_CAF1 277763 85 - 1
AAAUCUGAUAUCAUUCAGCGUCCGUAAAAAA-------A------AAGGGAACCCGCG-UCU-UUUAUGUGCG------ACGCGCCGAGAUUGUGAAGCAGAUUUA
(((((((...((((((.((((((((((((..-------.------..((....))...-..)-))))))...)------))))...))....))))..))))))). ( -22.40)
>DroEre_CAF1 175790 95 - 1
AAAUCUGAUAUCAUUCGGCGUCCGUAAAGAA-------AAAUAAAGAGUGAACCCUCGGUGU-UUUAUGGCCAAA---GGGUCGUUGAGAUUGUGAGGCGGAAUUU
...((((...((((((...............-------.......))))))..(((((..((-(((((((((...---.))))).))))))..))))))))).... ( -22.95)
>DroWil_CAF1 228167 104 - 1
AAAUCUGAUAUCAUUCAAAGUCCGUAAAAAAACCAAAAAAAUUA-AAGGGAACCCUCGUCUU-UUUAUGGCCCGAGCAGAGACGACGAGAUUGUGUAGCAGAUUUU
(((((((....(((....(((((((...................-.(((....)))((((((-(.....((....)))))))))))).)))))))...))))))). ( -20.70)
>DroPer_CAF1 185488 91 - 1
AAAUCUGAUAUGAUUCGGCGUCCGUAAAA-A-------GAAUAAAGAGGGA-CCCUC--UUU-UUUACGGCCACC---GAGACGUUGAGAUUGUGAAACAGAAUUU
.(((((.(.(((.(((((.(.((((((((-(-------......(((((..-.))))--)))-))))))).).))---))).)))).))))).............. ( -26.50)
>consensus
AAAUCUGAUAUCAUUCGGCGUCCGUAAAAAA_______AAAUAAAGAGGGAACCCUCG_UUU_UUUAUGGCCAAA___GAGUCGUUGAGAUUGUGAAGCAGAAUUU
...((((...((((((((((.(((((((.................((((....))))......)))))))............))))))....))))..)))).... (-10.81 = -12.34 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:41 2006