Locus 4861

Sequence ID 3R_DroMel_CAF1
Location 12,761,861 – 12,761,951
Length 90
Max. P 0.932304
window7963

overview

Window 3

Location 12,761,861 – 12,761,951
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.73
Mean single sequence MFE -30.88
Consensus MFE -26.00
Energy contribution -25.64
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -1.73
Structure conservation index 0.84
SVM decision value 1.22
SVM RNA-class probability 0.932304
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12761861 90 - 27905053
-UUUUUUCCUUACAGGCCGGAGAAAAUAGCCAGCGAUGAUGAGUGGCGCCUGGUUACAGGCGGUCCUUAUUGAUGGCCCUUGCUGUGGUUU
-............((((((.((......((((....(((((((.(.((((((....)))))).).))))))).)))).....)).)))))) ( -30.30)
>DroSec_CAF1 136805 90 - 1
-UUUUUUCCUUACAUGCCGGGGAAAAUGGCCAGCUAUGAUGAGUGGCGUCUGGUUGCAGCAGGCCCUUAUUGAUGGCCCUUGCUGUGGUUU
-..............((((.((.....(((((....(((((((.(((.((((....))).).)))))))))).)))))....)).)))).. ( -28.50)
>DroSim_CAF1 138582 90 - 1
-UUUUUUCCUUACAUGCCGGGGAAAAUGGCCAGCUAUGAUGAGUGGCGCCUGGUUGCAGCAGGCCCUUAUUGAUGGCCCUUGCUGUGGUUU
-..((((((((.......)))))))).(((..(((((.....))))))))...(..(((((((((.........))))..)))))..)... ( -28.90)
>DroEre_CAF1 143735 91 - 1
CUUUUUUUCCUACAGGCCAGGGAAAAUGGCCAGCUAUGAUGAGUGGCGCCUGGUUGCAGCAGGCCUUUAUUGAUGGCCAUUGCCGUGGUUU
.............((((((.((..(((((((((((((.....)))))(((((.......))))).........)))))))).)).)))))) ( -35.30)
>DroYak_CAF1 133881 91 - 1
UUUUUUUUCUUACAGGCCAGGGAAAAUGGCCAGCUAUGAUGAGUGGCGCCUGGUUGCAGCAGGCCUUUAUUGAUGGCCCUUGCUGUGGUUU
............(((((..((........)).(((((.....)))))))))).(..(((((((((.........))))..)))))..)... ( -31.40)
>consensus
_UUUUUUCCUUACAGGCCGGGGAAAAUGGCCAGCUAUGAUGAGUGGCGCCUGGUUGCAGCAGGCCCUUAUUGAUGGCCCUUGCUGUGGUUU
.............((((((.((.....(((((....(((((((.(((..(((....)))...)))))))))).)))))....)).)))))) (-26.00 = -25.64 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:38 2006