Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,759,541 – 12,759,642 |
Length | 101 |
Max. P | 0.972319 |
Location | 12,759,541 – 12,759,642 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -22.65 |
Energy contribution | -21.48 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.21 |
Mean z-score | -3.30 |
Structure conservation index | 0.82 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12759541 101 - 27905053 UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACGCCAGC-AGC (((((....))))).((((((......((((.(((...((((.((..((((((((((((...))))))))))))))))))..))).))))....))))-)). ( -26.10) >DroPse_CAF1 143437 101 - 1 CAACAUUUUGGUUAGCUGUUGCAAGCGUUGUGUUUAAUUGUUUGUUUUGGUCGUAAAAUCGGAUUUUAUGACCGGCAGCAUAAAAAGCUAGCCCAAAC-AAC .(((((..((.((.((....)))).))..)))))...(((((((....(((((((((((...)))))))))))((((((.......))).))))))))-)). ( -31.30) >DroSim_CAF1 136314 101 - 1 UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACGCCAGC-AGC (((((....))))).((((((......((((.(((...((((.((..((((((((((((...))))))))))))))))))..))).))))....))))-)). ( -26.10) >DroEre_CAF1 141369 101 - 1 UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCACCAACAUAAAAAGCGAACACCAGC-AGC (((((....))))).((((((((.....))).......(((((((((((((((((((((...))))))))))))..........)))))))))..)))-)). ( -25.30) >DroAna_CAF1 121812 102 - 1 UAACAUUUUUGUUAACUGUUGCAAGCAUUGAGUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCCAGCCCCAGCCAGC (((((....)))))..(((((((((((...........)))))....((((((((((((...))))))))))))))))))......((..((....))..)) ( -25.10) >DroPer_CAF1 150179 101 - 1 CAACAUUUUGGUUAGCUGUUGCAAGCGUUGUGUUUAAUUGUUUGUUUUGGUCGUAAAAUCGGAUUUUAUGACCGGCAGCAUAAAAAGCUAGCCCAAAC-AAC .(((((..((.((.((....)))).))..)))))...(((((((....(((((((((((...)))))))))))((((((.......))).))))))))-)). ( -31.30) >consensus UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACCCCAGC_AGC .......((((((...(((((((((((...........)))))....((((((((((((...)))))))))))))))))).....))))))........... (-22.65 = -21.48 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:37 2006