Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,740,716 – 12,740,850 |
Length | 134 |
Max. P | 0.999270 |
Location | 12,740,716 – 12,740,817 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -41.14 |
Consensus MFE | -32.78 |
Energy contribution | -32.66 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.69 |
Structure conservation index | 0.80 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12740716 101 + 27905053 UUAAUAUUCAUUGCCGGCUUCUGCUGCUGUUGCUGUUUUUGCUCCUGCCGGG---AAGUGGAAGUAUUUCGGCGG-----GGCUGUGGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((..(.......((.(((((((..---(..(....)..)..))))))-----))).)..)).)))))))).)))...))). ( -42.00) >DroSec_CAF1 115968 101 + 1 UUAAUAUUCAUUGCCGGCUCCUGCUGCUGUUGCUGUUUUUGCUCCUGCCGGG---AAGUGGAAGUAUUUCGGAGG-----GGCUGUGGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((..(.......((((((.(((..---(..(....)..)..))))))-----))).)..)).)))))))).)))...))). ( -43.10) >DroSim_CAF1 117582 101 + 1 UUAAUAUUCAUUGCCGGCUCCUGCUGCUGUUGCUGUUUUUGCUCCUGCCGGG---AAGUGGAAGUAUUUCGGAGG-----GGCUGUGGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((..(.......((((((.(((..---(..(....)..)..))))))-----))).)..)).)))))))).)))...))). ( -43.10) >DroEre_CAF1 122556 104 + 1 UUAAUAUUCAUUGCCGGCUCCUGCUGCUGCUGCUGUUUUUGCUCCUGCCGGGGGGCAGUGGAGGUACUUCGAAGG-----GGCUGUUGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((.(((.(((((((((((....)))))))..((((...)))))))).-----)))....)).)))))))).)))...))). ( -42.60) >DroYak_CAF1 112430 106 + 1 UUAAUAUUCAUUGCCGGCUCCUGCUGCUGUUGCUGUUUUUGCUCCUGUCGCA---AAGUCAAGGUAUUUCGAAGGUAUCGGGCUGUUGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((.((((.((((((.......)))---))).)..((((((.....)))))).)))....)).)))))))).)))...))). ( -34.90) >consensus UUAAUAUUCAUUGCCGGCUCCUGCUGCUGUUGCUGUUUUUGCUCCUGCCGGG___AAGUGGAAGUAUUUCGGAGG_____GGCUGUGGCUGCAGCAGGUGCUCAUGCAG ...........(((.(((.((((((((.((..(.(((......(((.(((((...............)))))))).....))).)..)).)))))))).)))...))). (-32.78 = -32.66 + -0.12)
Location | 12,740,716 – 12,740,817 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -30.91 |
Consensus MFE | -27.21 |
Energy contribution | -27.21 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.51 |
Structure conservation index | 0.88 |
SVM decision value | 3.47 |
SVM RNA-class probability | 0.999270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12740716 101 - 27905053 CUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCGCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACAGCAACAGCAGCAGAAGCCGGCAAUGAAUAUUAA .(((.((.((..(((((((.........(-----(.((((..............---..)))).)).((.......))....)))))))..)))))))........... ( -28.69) >DroSec_CAF1 115968 101 - 1 CUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCUCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACAGCAACAGCAGCAGGAGCCGGCAAUGAAUAUUAA .(((.((.((.((((((((..........-----((((((..............---..))).))).((.......))....)))))))).)))))))........... ( -30.39) >DroSim_CAF1 117582 101 - 1 CUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCUCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACAGCAACAGCAGCAGGAGCCGGCAAUGAAUAUUAA .(((.((.((.((((((((..........-----((((((..............---..))).))).((.......))....)))))))).)))))))........... ( -30.39) >DroEre_CAF1 122556 104 - 1 CUGCAUGAGCACCUGCUGCAGCAACAGCC-----CCUUCGAAGUACCUCCACUGCCCCCCGGCAGGAGCAAAAACAGCAGCAGCAGCAGGAGCCGGCAAUGAAUAUUAA .(((.((.((.((((((((.((.......-----.................(((((....)))))..((.......)).)).)))))))).)))))))........... ( -35.10) >DroYak_CAF1 112430 106 - 1 CUGCAUGAGCACCUGCUGCAGCAACAGCCCGAUACCUUCGAAAUACCUUGACUU---UGCGACAGGAGCAAAAACAGCAACAGCAGCAGGAGCCGGCAAUGAAUAUUAA .(((.((.((.((((((((..........(((.....))).......(((..((---(((.......)))))..))).....)))))))).)))))))........... ( -30.00) >consensus CUGCAUGAGCACCUGCUGCAGCCACAGCC_____CCUCCGAAAUACUUCCACUU___CCCGGCAGGAGCAAAAACAGCAACAGCAGCAGGAGCCGGCAAUGAAUAUUAA .(((.((.((.((((((((...............((((((...................))).))).((.......))....)))))))).)))))))........... (-27.21 = -27.21 + 0.00)
Location | 12,740,749 – 12,740,850 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.13 |
Mean single sequence MFE | -25.91 |
Consensus MFE | -20.48 |
Energy contribution | -20.32 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12740749 101 - 27905053 UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCGCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACA ..........((((((((((((.(..((......))..).))))))))..)))).....(((-----(.((((..............---..)))).)).))....... ( -26.49) >DroSec_CAF1 116001 101 - 1 UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCUCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACA ..........((((((((((((.(..((......))..).))))))))..)))).....((.-----((((((..............---..))).))).))....... ( -24.39) >DroSim_CAF1 117615 101 - 1 UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCCACAGCC-----CCUCCGAAAUACUUCCACUU---CCCGGCAGGAGCAAAAACA ..........((((((((((((.(..((......))..).))))))))..)))).....((.-----((((((..............---..))).))).))....... ( -24.39) >DroEre_CAF1 122589 104 - 1 UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCAACAGCC-----CCUUCGAAGUACCUCCACUGCCCCCCGGCAGGAGCAAAAACA ..........((((((((((((.(((......((((((...((....)))))))).......-----..)))..)))))))...(((((....))))))).)))..... ( -28.16) >DroYak_CAF1 112463 106 - 1 UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCAACAGCCCGAUACCUUCGAAAUACCUUGACUU---UGCGACAGGAGCAAAAACA ............(((((((((((.........((((((...((....))))))))..)))).(((.....)))....))).))))((---(((.......))))).... ( -26.10) >consensus UAAAAAAAUAUUGUCAGGUGCUGGAACAAAAAGCUGCAUGAGCACCUGCUGCAGCCACAGCC_____CCUCCGAAAUACUUCCACUU___CCCGGCAGGAGCAAAAACA ..........((((((((((((.(..((......))..).)))))))((((......))))................................)))))........... (-20.48 = -20.32 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:30 2006