| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,729,068 – 12,729,161 |
| Length | 93 |
| Max. P | 0.649705 |
| Location | 12,729,068 – 12,729,161 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.66 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12729068 93 - 27905053 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUC------GUCGU------CGAGAAGCAGCUUUUAUUUUUUCGCCUUUCUUUUCUUGUUUUC-UCCUUUACAU (((((.(((((((....))))))).))))).....------((.(.------.(((((((((.........................))).))))-))..).)).. ( -12.81) >DroPse_CAF1 107146 86 - 1 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUCGACAUCGUCGA------CGAGAAGCAGAUUUUAUUUUU-CGUCUUUCUU--------UUC-UCCUUU---- (((((.(((((((....))))))).)))))..((((((...)))))------)((((((.(((..........-......))))--------)))-))....---- ( -22.09) >DroSec_CAF1 104601 93 - 1 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUC------GUCGU------CGAGAAGCAGCUUUUAUUUUUUUGCCUUUCUUUUCUUGGUUUC-UCCUUUACAU (((((.(((((((....))))))).))))).....------((.(.------.(((((((.((............))....(.......))))))-))..).)).. ( -15.50) >DroWil_CAF1 136276 93 - 1 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUC------GUCGAGCUGCGGCAGAAGCAGCUUUUAUUUUUGU-UUUUUUUU--UUCGUCUCCCUCUUCU---- (((((.(((((((....))))))).))))).....------...(((((((.......)))))))..........-........--................---- ( -19.50) >DroAna_CAF1 90285 85 - 1 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUCGAC---GUCGU------CGAGCAGCAGCUUUUAUUUUUUG-------UUUCGUUCUUUUC-UCCUUU---- ((((...(((((((......((.(((((...(((((((---...))------))).))..))))).))......)-------))))))...))))-......---- ( -19.00) >DroPer_CAF1 114342 86 - 1 GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUCGACGUCGUCGA------CGAGAAGCAGAUUUUAUUUUU-CGUCUUUCUU--------UUC-UCCUUU---- (((((.(((((((....))))))).)))))..((((((...)))))------)((((((.(((..........-......))))--------)))-))....---- ( -22.09) >consensus GAAACAUGCGAAACUUAUUUUGCAAGUUUUAUGUC______GUCGA______CGAGAAGCAGCUUUUAUUUUUUCGUCUUUCUU___UUGUUUUC_UCCUUU____ (((((.(((((((....))))))).)))))............................................................................ ( -8.90 = -8.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:27 2006