Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,728,528 – 12,728,618 |
Length | 90 |
Max. P | 0.549073 |
Location | 12,728,528 – 12,728,618 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -24.87 |
Consensus MFE | -18.07 |
Energy contribution | -19.22 |
Covariance contribution | 1.15 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.73 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12728528 90 - 27905053 ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA------GCUGGAGAU------GGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGGGA ......(((.((((...)))).)))..((((.------..(((((((------.......((..(((....))).))..........))))))).))))... ( -22.83) >DroSec_CAF1 104057 102 - 1 ACGAUAGCAACGGCCAUGCCGAUGUAGCUGGAGAUGGAGCUGGAGAUGGAGCUGGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA ......(((.((((...)))).))).(((((......((((........))))((((((.((..(((....))).))..........))))))..))))).. ( -28.60) >DroSim_CAF1 105504 78 - 1 ACGAUGGCAACGGCCAUGCCGAUGUAGCUGG------------------------AGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA ......(((.((((...)))).))).(((((------------------------.....((..(((....))).))......(((.....))).))))).. ( -23.80) >DroEre_CAF1 109996 84 - 1 ACGACGGA------------GCUGGAGCUGGA------GAUGGAGAAGGCGAUGGCGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA ........------------(((((...((((------(((.......((....))....((..(((....))).))..........))))))).))))).. ( -20.90) >DroYak_CAF1 99684 96 - 1 ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA------GCUGGAGAUGGCGAAGGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA ......(((.((((...)))).))).(((((.------(((......)))...((((((.((..(((....))).))..........))))))..))))).. ( -28.20) >consensus ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA______GCUGGAGAUGG_G__GGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA ......(((.((((...)))).))).(((((.............................((..(((....))).))......(((.....))).))))).. (-18.07 = -19.22 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:26 2006