Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,723,119 – 12,723,219 |
Length | 100 |
Max. P | 0.554844 |
Location | 12,723,119 – 12,723,219 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -21.78 |
Consensus MFE | -14.67 |
Energy contribution | -14.42 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.14 |
Structure conservation index | 0.67 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12723119 100 + 27905053 --------ACCGC--CCC-----UUCGGCG---AGCCGUGUCUUUGCC--ACUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA --------..(((--(..-----...))))---.((((((.....((.--((..(......)..)).))..)))))).((((((((.(((((((......))))))).))))..)))).. ( -24.20) >DroVir_CAF1 110283 101 + 1 G----CU-CGCGCUCGUC-----UUCGGU------U-UAGUCUUCUCU--ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA (----(.-...)).....-----.(((((------.-(((......))--)..((((.(((((((..(((....))))))))))...(((((((......)))))))...))))))))). ( -17.90) >DroGri_CAF1 163124 107 + 1 UUCCCCU-UGGGCUCGUC-----UUCGGU------U-UUGCCUUCUCCUGACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA .......-.((((....(-----....).------.-..)))).........(((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))..... ( -21.30) >DroWil_CAF1 129810 99 + 1 --------AUCGU--CCA-----AUCGGUG---G-AAAAGACUUGAAC--GCUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA --------.....--...-----.((((((---.-.((((........--........(((((((..(((....))))))))))...(((((((......)))))))))))..)))))). ( -21.20) >DroMoj_CAF1 117345 103 + 1 U----CUCCCCGCUCCUC-----UUCGGU------UUUUGUCUUCUCC--ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUGAAAUUUUAUGCAUUGUCACUGAA .----......((.....-----((((((------(((((((......--...)))).(((((((..(((....))))))))))......))))))))).......))............ ( -19.00) >DroAna_CAF1 84282 108 + 1 --------AGCCC--CUCCUCUAUCCAGCGAGAAGCAGUGUCUUUGGC--AGUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA --------.((..--(((((......)).)))..))...........(--(((((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))))).. ( -27.10) >consensus ________AGCGC__CUC_____UUCGGU______U_UUGUCUUCUCC__ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA ....................................................(((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))..... (-14.67 = -14.42 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:25 2006