Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,722,759 – 12,722,849 |
Length | 90 |
Max. P | 0.658827 |
Location | 12,722,759 – 12,722,849 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.83 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -20.81 |
Energy contribution | -20.65 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.20 |
Mean z-score | -2.47 |
Structure conservation index | 0.73 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12722759 90 - 27905053 -----UUAACCGGGCCCA---CGGUAGGGAGUCAUAAAAAUGACGACAAUUUCGUUUUAUUUUUUAUGACAAA--------GCGUCGCCUGCGGUCCCAAAUCCUC -----...((((......---)))).((((((((((((((.(((((.....)))))....))))))))))...--------(((.....)))..))))........ ( -27.80) >DroGri_CAF1 162573 105 - 1 GAGUCUUAACG-GGAGAACAGCAGCAGCGGGUCAUAAAAAUGAUGACAAUUUCGUUUUAUUUUUUAUGACAUUGCGACGCGGCGUCGCCUGCGGUCUCCACUGUAC ...........-(((((...(((((.((((((((((((((.(((((.....)))))....)))))))))).))))((((...))))).))))..)))))....... ( -35.00) >DroSec_CAF1 98349 89 - 1 -----UUAACCG-GCCCA---CGGUAGGGAGUCAUAAAAAUGACGACAAUUUCGUUUUAUUUUUUAUGACAAA--------GCGUCGCCUGCGGUCCCAACUCCUC -----...((((-.....---)))).((((((((((((((.(((((.....)))))....))))))))))...--------(((.....)))..))))........ ( -27.60) >DroEre_CAF1 103872 90 - 1 -----UUAACCGGGCCCA---CGGUAGGGAGUCAUAAAAAUGACGACAAUUUCGUUUUAUUUUUUAUGACAAA--------GCGUCGCCUGCGGUCCCACCACCUC -----...((((......---)))).((((((((((((((.(((((.....)))))....))))))))))...--------(((.....)))..))))........ ( -27.80) >DroYak_CAF1 93655 90 - 1 -----UUAACCGGGCCCA---CGGUAGGGAGUCAUAAAAAUGACGACAAUUUCGUUUUAUUUUUUAUGACAAA--------GCGUCGCCUGCGGUCCCAACUCCUC -----...((((......---)))).((((((((((((((.(((((.....)))))....))))))))))...--------(((.....)))..))))........ ( -27.80) >DroAna_CAF1 83904 89 - 1 -----UGAACCGAGCCCA---CGGUAGGGAGUCAUAAAAGUGACGACAAUUUCGUUUUAUUUUUUAUGACA-A--------GCGUCGCCUGCGGUCUCCACUGCUU -----......(((((((---.((..(.(.((((((((((.(((((.....)))))....)))))))))).-.--------.).)..)))).)).)))........ ( -24.60) >consensus _____UUAACCGGGCCCA___CGGUAGGGAGUCAUAAAAAUGACGACAAUUUCGUUUUAUUUUUUAUGACAAA________GCGUCGCCUGCGGUCCCAACUCCUC .............(((......))).((((((((((((((.(((((.....)))))....))))))))))...........(((.....)))..))))........ (-20.81 = -20.65 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006