Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,708,331 – 12,708,430 |
Length | 99 |
Max. P | 0.892470 |
Location | 12,708,331 – 12,708,430 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.26 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -29.78 |
Energy contribution | -29.78 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.27 |
Mean z-score | -1.99 |
Structure conservation index | 0.88 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12708331 99 - 27905053 GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAU--CACAUUUGUCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..((((((((((.--.....))))))))))..)))))---------.. ( -37.50) >DroSec_CAF1 84101 101 - 1 GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..(((((((((((......)))))))))))..)))))---------.. ( -37.10) >DroSim_CAF1 85268 101 - 1 GUUUAUCUUGUGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUUGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(..((..(((((((((((......)))))))))))..))..)---------.. ( -35.50) >DroEre_CAF1 89324 101 - 1 GUUUAUCUUGCAAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGUCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA---------AG .........((...(((((((((.((((.......)))).)))).))))).))....(((((..(((((((((((......)))))))))))..)))))---------.. ( -30.80) >DroYak_CAF1 78631 101 - 1 CUUUAUCUCGCGAUGGCUGCGGCAAGGCAAAUCGGGUUUAGCUGUCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGCCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..(((((((((((......)))))))))))..)))))---------.. ( -37.10) >DroAna_CAF1 70892 100 - 1 GUGUAUCUUUU-----UUGUGGCAAAGC-----GAGUUUAUCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCGAACAGGCAUUCAGUAGAUACUUUUGAACGCCUCGCAG (((.((((...-----..(((((..(.(-----(.((......)))).)..)))))...)))).)))...((((...(((.(((((.........))))).))))))).. ( -24.80) >consensus GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA_________AG ...........(((((((((((((((((.......))))...)))))..))))))))(((((..(((((((((((......)))))))))))..)))))........... (-29.78 = -29.78 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:19 2006