Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,809,381 – 1,809,475 |
Length | 94 |
Max. P | 0.986405 |
Location | 1,809,381 – 1,809,475 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.38 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -16.70 |
Energy contribution | -17.95 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.18 |
Mean z-score | -3.59 |
Structure conservation index | 0.58 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1809381 94 + 27905053 AUCGGACUCUUGCAGCUAGC--------UUCUGGCU---GGCU--CGGUUCGGCUCGGCUCCGAAAGUGAAAAAUGAAAAAUAAAAAAUUGCUGAAAAAAUAAGUCA .(((((((...(.(((((((--------.....)))---))))--)))))))).((((((((....).))....(....)..........)))))............ ( -22.60) >DroSec_CAF1 120068 92 + 1 AUCGGACUCUUGCAGCUAGCUAGCUAGCUGCUGGCU---GGCU--CGG----------UUUCGAAAGUGAAAAAUGAAAAAUAAAAAAUAGCUGCAAAAAUAAGUCA ....((((.((((((((((((((((((...))))))---)))(--((.----------((((....).)))...)))...........))))))))).....)))). ( -31.10) >DroSim_CAF1 123103 92 + 1 AUCGGACUCUUGCAGCUAGCUAGCUAGCUGCUGGCU---GGCU--CGG----------UUUCGAAAGUGAAAAAUGAAAAAUAAAAAAUAGCUGCAAAAAUAAGUCA ....((((.((((((((((((((((((...))))))---)))(--((.----------((((....).)))...)))...........))))))))).....)))). ( -31.10) >DroEre_CAF1 116177 96 + 1 AUCGGGCUCUUGCAGCUAGCU-GCUGGCUGUUGGCUGCUGGCUGCUGG----------CUCCGAAAAUGAAAAAUGAAAAAUAAAAAAUAGCUGAAAAAACAAGUCA .(((((((...(((((((((.-((..(...)..)).))))))))).))----------).))))........................................... ( -30.90) >consensus AUCGGACUCUUGCAGCUAGCU_GCUAGCUGCUGGCU___GGCU__CGG__________CUCCGAAAGUGAAAAAUGAAAAAUAAAAAAUAGCUGAAAAAAUAAGUCA ....((((.(((((((((((((((.....))))))..........(((............))).........................))))))))).....)))). (-16.70 = -17.95 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:20 2006