Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,708,063 – 12,708,178 |
Length | 115 |
Max. P | 0.581806 |
Location | 12,708,063 – 12,708,178 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -18.79 |
Energy contribution | -20.63 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.08 |
Mean z-score | -1.89 |
Structure conservation index | 0.62 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12708063 115 - 27905053 ACCUGGCCUCAGAGCCCGUAUCUGAGGCCAAGAAACCGCACUUAUUUAUUGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA ....((.((.((((((((.....(((((((....((((...(((.....)))....)))))))))))..)))).)))))).))((((...(((((....))))).....)))).. ( -40.90) >DroSec_CAF1 83831 115 - 1 ACCUGGGCGCAGAGCCCGUAUCUGAAGCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA .....(((..((((((((.....((.((((.................((((.....)))))))).))..)))).)))).).))((((...(((((....))))).....)))).. ( -31.02) >DroSim_CAF1 84997 115 - 1 ACCUGGCCGCAGAGCCCGUAUCUGAGUCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA ..(((((((.((((.(((...((((((..........................)))))).))).)))).)))....))))..(((((...(((((....))))).....))))). ( -30.67) >DroEre_CAF1 89058 111 - 1 ACCGAGG--UAGAGCCCGUACUUGCAGCU-AAAAACCUAACUUAUUUAUCCUAACUCGGUUGGCCUCUUCGGGAAUCGAAACCGGGGAAC-CUAUACUCAUAGAUAAUGCCCUGA .((((((--.((.(((.((....))....-...((((....................)))))))))))))))..........(((((...-((((....))))......))))). ( -24.05) >DroYak_CAF1 78373 103 - 1 ACCGAGUCUCAGAGCCCA------------AAAACCCUAACUUAUUUAUCCAAACUCGGUUGUCCUCUUCGGGACUCGAAUCCGGGGACCUCUAUACUCAUAGAUAACACCCUGA ..((((((((((((..((------------...(((.....................)))))..))))..))))))))....(((((...(((((....))))).....))))). ( -25.90) >consensus ACCUGGCCGCAGAGCCCGUAUCUGAAGCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA ...........(((((((.....((.(((....((((....................))))))).))..)))).))).....(((((...(((((....))))).....))))). (-18.79 = -20.63 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:18 2006