Locus 4847

Sequence ID 3R_DroMel_CAF1
Location 12,696,658 – 12,696,751
Length 93
Max. P 0.657098
window7938

overview

Window 8

Location 12,696,658 – 12,696,751
Length 93
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 90.51
Mean single sequence MFE -28.34
Consensus MFE -24.04
Energy contribution -23.88
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.26
SVM RNA-class probability 0.657098
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12696658 93 - 27905053
UGGAUCGUUUCCAUAUUCGAGGCGUGGGCCGUAGAAACACAGGCCUUGCCCAGAGUCUU------UGGACUUGCUCUUGGAAUAUUCUUGAUUUUUUUC
.(((.....)))(((((((.((((.(((((((......)).)))))))))).(((((..------..))))).......)))))).............. ( -25.50)
>DroSec_CAF1 72492 92 - 1
UGGAUCGUUUCCAUAUCCGAGGCGUGGGCCGUAGACACUGAGGCCUUGCCCAGGGUCUU------UAGACUUGCUCUUGGAAUAUUCUUAAUUU-UUUC
((((.....))))..(((((((.(..((.(..((((.(((.(((...)))))).)))).------..).))..)))))))).............-.... ( -29.70)
>DroSim_CAF1 73606 92 - 1
UGGAUCGUUUCCAUAUCCGACGCGUGGGCCGUAGACACACAGGCCUUGCCCAGGGUCUU------UAGACUUGCUCUUGGAAUAUUCUUGAUUU-UUUC
((((.....))))..(((((.(((.(((((((......)).))))))))...(((((..------..)))))....))))).............-.... ( -22.10)
>DroEre_CAF1 77379 98 - 1
UGGAUCGUUUCCAUAUCCGAGGCGUGGGCCGUAGACACACUGGCCUUGCCCAGGGUCUGUCGACUUGGUCUUGGUCUUGGAAUAUUCUUGAUUU-UUUC
((((.....))))..((((((((..((((((..((((....((((((....))))))))))....))))))..)))))))).............-.... ( -33.70)
>DroYak_CAF1 66478 92 - 1
UGGAUCGUUUCCAUAUCCGAGGCGUGGGCCGUAGACACACUGGCCUUGCCCAGGGUCUU------UGGACUUGGUCUUGGAGUAUUCUUGAUGU-UUUC
((((.....))))..((((((((.(((((((.((((...((((......)))).)))).------))).)))))))))))).............-.... ( -30.70)
>consensus
UGGAUCGUUUCCAUAUCCGAGGCGUGGGCCGUAGACACACAGGCCUUGCCCAGGGUCUU______UGGACUUGCUCUUGGAAUAUUCUUGAUUU_UUUC
((((.....))))..(((((((((.(((((...........)))))))))..((((((........))))))....))))).................. (-24.04 = -23.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:15 2006