Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,695,063 – 12,695,173 |
Length | 110 |
Max. P | 0.782021 |
Location | 12,695,063 – 12,695,173 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 73.11 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -18.99 |
Energy contribution | -19.38 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.25 |
Mean z-score | -1.71 |
Structure conservation index | 0.53 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12695063 110 - 27905053 GAAACCCAAGCGUUGUAAGUGUGCGUA-AUGCGUUUCCAACAGCGAGCGUCCUCUGGUGGGUUGUCAGCAAAGCAUAAGCUGCAAAAGAAAAACAAUAGGGGGCGCCAGCG (((((.((.((((.........)))).-.)).))))).....((..((((((((((.((..(((.((((.........)))))))........)).))))))))))..)). ( -33.30) >DroSec_CAF1 70969 110 - 1 AAAUCCCAAGCGUUGUAAGUGUGCGUA-AUGCCUUUCAAACAGCGAGCGUCCUCUGGUGGGGUGACUGCAAAGCUUGAGCUGCGAAAGAAAUUCAGUAGGGGGCGCCAGCA .........(((((((...((.((...-..))....)).)))))(.((((((((((.((((....))(((..((....)))))..........)).))))))))))).)). ( -33.90) >DroSim_CAF1 72048 110 - 1 AAAUCCCAAGCGUUGUAAGUGUGCGUA-AUGCGUUUCAAACAGCGAGCGUCCUCUGGUGGGGUUACCGCAAAGCUUGAGCUGCGAAAGAAAAUCAAUAGGGGGCGCCAGCG .........(((((((...((.(((..-...)))..)).)))))(.((((((((((((((.....)))).....((((....(....)....))))))))))))))).)). ( -38.00) >DroEre_CAF1 75706 110 - 1 AAAAACGAAAUGUUUUAUGUGUGCGUA-AUGCGUUUCGAACGGCGGGCGACCUCUGGUGAGAAAGCAGCAAAGCUAGAGCUGCGACAGAAAAACAAUAGGGGGCGCCAGCG .....((((((((.(((((....))))-).))))))))....((.((((.(((((.((......(((((.........))))).........))....))))))))).)). ( -39.36) >DroYak_CAF1 64673 110 - 1 AAAAAAUAAAUCUUGUAUGUGUGCGUA-AUGCGUUUUAAUCAGCGGGCGACCUCUGGUGGAAAAGCAGCUAAGCUGGAGCUGCGAAAGAAGAACAAUAGGGGGCGCUAGCG ..(((((..((..((((....))))..-))..))))).....((.((((.((((((.((.....((((((.......))))))..........)).)))))).)))).)). ( -29.36) >DroMoj_CAF1 83879 111 - 1 ACACCUUCUGCUCUGCAUGUGUGCGUGCAUGGGGCACACCUACCAAACGCUCUCUGUCGGCAAGUGUGCGAAGCUGUAUGUGCGCACACAUUUCAGUAGAUGGCGACUGCC .(.((.((((((....(((((((((..((((.(((............(((.....).))(((....)))...))).))))..)))))))))...)))))).)).)...... ( -42.20) >consensus AAAACCCAAGCGUUGUAAGUGUGCGUA_AUGCGUUUCAAACAGCGAGCGUCCUCUGGUGGGAAGACAGCAAAGCUUGAGCUGCGAAAGAAAAACAAUAGGGGGCGCCAGCG ......................((.....(((..........))).((((((((((.((............(((....)))............)).))))))))))..)). (-18.99 = -19.38 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:13 2006