Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,687,038 – 12,687,128 |
Length | 90 |
Max. P | 0.928288 |
Location | 12,687,038 – 12,687,128 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 78.08 |
Mean single sequence MFE | -12.47 |
Consensus MFE | -4.64 |
Energy contribution | -5.60 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.08 |
Mean z-score | -2.33 |
Structure conservation index | 0.37 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12687038 90 + 27905053 CUCUUU-UUCCCAGUCGCCAUUUUUCUCCAUAUUGAAAAAAAUUAUUAGGAACUCGGCAUGAUAUUUCUUAAAAA-AUGUUCUGGAUCCAAU ......-...((((..(((.((((((........)))))).........(....))))..(((((((......))-)))))))))....... ( -13.50) >DroSec_CAF1 63035 76 + 1 CUCUUU-UUCCCAGUCGCCAUUUUUCUCCACAUUGAAACAAAUUAUUGGGAACUCUUCAUGAUAUUUCUUUAAAA-AU-------------- ......-((((((((.......((((........))))......)))))))).......................-..-------------- ( -10.12) >DroSim_CAF1 63708 76 + 1 CUCUUU-UUCCCAGUCGCCAUUUUUCUCCACAUUGAAACAAAUUAUUGGGAACUCUUCAUGAUAUUUCUUUAAAA-AU-------------- ......-((((((((.......((((........))))......)))))))).......................-..-------------- ( -10.12) >DroEre_CAF1 67548 90 + 1 CUCUUU-UUCCCAGACGCCAUUUUACUCCACAUUCAAACAAAAGUUUGGGAACUUGGCAUGGCAUUUCUUUAAAA-AUGUGCUUCAUUUCAU ......-(((((((((...........................)))))))))...(((...((((((......))-)))))))......... ( -14.83) >DroYak_CAF1 56506 92 + 1 CUCUUUUUUCCCAGACGCCAUUUUUCCCCACAUUCAAAUAAAUGCUUGGAAACUUGGCAUGAAAUUUCUUUAAAAUAUAUUCUUUAUUCCAU ................((((..(((((...((((......))))...)))))..)))).................................. ( -13.80) >consensus CUCUUU_UUCCCAGUCGCCAUUUUUCUCCACAUUGAAACAAAUUAUUGGGAACUCGGCAUGAUAUUUCUUUAAAA_AU_U_CU__AU___AU .......((((((((.......((((........))))......))))))))........................................ ( -4.64 = -5.60 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:11 2006