Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,667,441 – 12,667,544 |
Length | 103 |
Max. P | 0.982045 |
Location | 12,667,441 – 12,667,544 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.68 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -11.12 |
Energy contribution | -11.56 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.27 |
Mean z-score | -2.62 |
Structure conservation index | 0.50 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.982045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12667441 103 - 27905053 UUGCUUUGCUGUAUUUGACUUAGUAAUGUCAUUAGCAUA----AGUUCAUUUGAAAUCCACUUCCAA-AAAUGUUCUGAUUAAACUAAGCA--------UUCCUCAGCAGAGCACU .((((((((((....((.((((((.((((.....)))).----((..((((((((......)))...-)))))..))......))))))))--------.....)))))))))).. ( -27.00) >DroSec_CAF1 43494 103 - 1 UAGCUUUGCUGUAUUUGACUUAGUAAUGUCGUUGGCAUA----AGUUAAUUUAAAAUCCACUUCCAA-AAAUGUUGUGAUUAAACUCAGCA--------UUCCUCAGCAGAGCCCU ..(((((((((...((((((((....(((.....)))))----))))))..................-.(((((((.(......).)))))--------))...)))))))))... ( -25.50) >DroSim_CAF1 44121 103 - 1 UAGCUUUGCUGUAUUUAACUUAGUAAUGUCGUUGGCAUA----AGUUAAUUUAAAAACCACUUCCAA-AAAUGUUCUGAUUAAACUCAGCA--------UUCCUCAGCAGAGCACU ..(((((((((...((((((((....(((.....)))))----))))))..................-.((((..((((......))))))--------))...)))))))))... ( -23.80) >DroEre_CAF1 47315 114 - 1 UUACCUUGCUGCAU-UGACUUAAAAAUGUCGUUAACAUACAGAGGUUCAUAUGAAAUCCACUUCCUA-AAAUGUUCCGAUGAAAUUCAACAUUUCAAAAUUCCUCAGCAAAACACU .....(((((....-.(((........)))...........(((((((....)))............-(((((((..((......))))))))).......)))))))))...... ( -16.10) >DroYak_CAF1 36224 105 - 1 UU-GCUUGCUACAU-CGACCUUG-UAUGUCGUUAACAUACAUACGUUUUUAUAAAAUCCACUUCCAAAAAAUGUUCUGAUAACAUUCAACA--------UUCCUCAGCAGAGCACU .(-(((((((....-.(((..((-(((((.....)))))))...)))......................(((((..(((......))))))--------))....)))).)))).. ( -17.70) >consensus UUGCUUUGCUGUAUUUGACUUAGUAAUGUCGUUAGCAUA____AGUUAAUUUAAAAUCCACUUCCAA_AAAUGUUCUGAUUAAACUCAGCA________UUCCUCAGCAGAGCACU ..(((((((((.....((((.....((((.....)))).....))))........................((((..(......)..)))).............)))))))))... (-11.12 = -11.56 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:08 2006