Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,658,644 – 12,658,738 |
Length | 94 |
Max. P | 0.940439 |
Location | 12,658,644 – 12,658,738 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -18.79 |
Energy contribution | -19.87 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.06 |
Mean z-score | -3.13 |
Structure conservation index | 0.73 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12658644 94 - 27905053 AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGAUACCAUGUUGUGCUGUGAAAGUAUGUUUAUA .(((((((.(((((((((..(((((((..(((((........)))))(((((.........))))))))))))..)).))))))).))))))). ( -26.60) >DroSec_CAF1 34994 94 - 1 AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGUUACCAUGUUGUGCUGUGAAAGUAUGUUUAUA .(((((((.(((((((((..(((((((...(((.(((((....))))))))..(((((...))))))))))))..)).))))))).))))))). ( -28.30) >DroSim_CAF1 35559 94 - 1 AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGUUACCAUGUUGUGUUGUGAAAGUAUGUUUAUA .(((((((.(((((((((..(((((((...(((.(((((....))))))))..(((((...))))))))))))..)).))))))).))))))). ( -25.40) >DroEre_CAF1 38527 86 - 1 AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGGGUAGUGUUUGUAGCCA--------UGUAAUGCUGUGAAAGUAUAUUUAUA .(((((((.(((((((((((..(((((..((((.((((......))))....))))..))--------)))..)))).))))))).))))))). ( -23.00) >DroYak_CAF1 27380 86 - 1 AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUCGUAACCA--------UGUUGUGCUGUGAAAGUAUGUUUAUA .(((((((.(((((((((..(((((((..(((..(((((....))))).....)))..))--------)))))..)).))))))).))))))). ( -25.70) >consensus AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUG_UACCAUGUUGUGCUGUGAAAGUAUGUUUAUA .(((((((.((((((((((((((((((...(((.(((((....))))))))...............))))))))))).))))))).))))))). (-18.79 = -19.87 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:06 2006