Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,652,358 – 12,652,467 |
Length | 109 |
Max. P | 0.799970 |
Location | 12,652,358 – 12,652,467 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -18.22 |
Energy contribution | -20.00 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.22 |
Mean z-score | -1.86 |
Structure conservation index | 0.58 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12652358 109 - 27905053 CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCUCGGAUCCUGGGACUCUGUCCAUUUUCCUCUCGGCC----ACCGGCCAUUCAUAUUGAAUGGCCA ...(((......)))...(((....(((((.((..........(((((((((...))))))))).)).)))))......)))..----...((((((((.....)))))))). ( -30.90) >DroSec_CAF1 28815 109 - 1 CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCCCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGACAUUUUCCCCCCGGCC----ACCGGCCAUUCAUAUUGACUGGCCA ...(((......))).............((.(((.........(((((((((...))))))))).(((.....)))....))))----)..(((((.((.....)).))))). ( -33.30) >DroSim_CAF1 26823 109 - 1 CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCC----ACCGGCCAUUCAUAUUGAAUGGCCA ...........((((..((......)).))))...........(((((((((...)))))))))(((((...........))))----)..((((((((.....)))))))). ( -38.50) >DroYak_CAF1 20823 113 - 1 CACCGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCCACCGGCCGGCCAUUCAUAUUGAAUGGCCA ..(((......((((..((......)).))))...........(((((((((...)))))))))(((((...........))))).)))..((((((((.....)))))))). ( -40.80) >DroAna_CAF1 16771 95 - 1 AACCGCA-AACCACAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGG--CCCGGGUCCU------CUUGGC------UUCCUGGCU---GGCCGGACAUUCAUAUCGAAUGGCCA ....((.-.........((((....((......))......((((--((.(((.((.------...)).------.))).))))---)).))))(((((.....))))))).. ( -23.50) >DroPer_CAF1 30865 92 - 1 GACCGCA--ACCACAAAUCCCUUUCCAAUGUGCUCUAAUUAUCGGUUC---GGUCCUCGGGUGCUGG------------UGCCC----AUUGAGCCUUCCCAUCGAAUGGCCG (((((.(--(((...............................)))))---))))...(((((....------------)))))----...(.((((((.....))).)))). ( -21.38) >consensus CACCGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCC____ACCGGCCAUUCAUAUUGAAUGGCCA ...((((.....((......))......))))...........(((((((((...)))))))))...........................((((((((.....)))))))). (-18.22 = -20.00 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:03 2006