Locus 4835

Sequence ID 3R_DroMel_CAF1
Location 12,650,090 – 12,650,196
Length 106
Max. P 0.999941
window7924

overview

Window 4

Location 12,650,090 – 12,650,196
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 96.23
Mean single sequence MFE -27.42
Consensus MFE -26.70
Energy contribution -27.18
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -2.58
Structure conservation index 0.97
SVM decision value 4.71
SVM RNA-class probability 0.999941
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12650090 106 - 27905053
AGAUUUGGGUGUCAAUAAAUCGAUAACCAGCGCUCCUAUUAAUCUAUGCAGAUUAAAAAUCCAUUCCUCUAUUUUAGUGGGUUUCUGGUUCGUCGAUACCCCGAAA
...((((((.((......((((((((((((........(((((((....)))))))(((((((((..........))))))))))))))).)))))))))))))). ( -30.00)
>DroSec_CAF1 26552 106 - 1
AGAUUUGGGUGUUAAUAAAUCGAUACCCAGCGCUCCUAUUAAUCUAUGCAGAUUAAAAAUCCAUUCCUCUAUUUUAGUGGGUUUCUGGUUCGUCGAUACCCCGAAA
...((((((.((......((((((..((((........(((((((....)))))))(((((((((..........)))))))))))))...)))))))))))))). ( -26.70)
>DroSim_CAF1 24551 106 - 1
AGAUUUGGGUGUUAAUAAAUCGAUAACCAGCGCUCCUAUUAAUCUAUGCAGAUUAAAAAUCCAUUCCUCUAUUUUAGUGGGUUUCUGGUUCGUCGAUACCCCGAAA
...((((((.((......((((((((((((........(((((((....)))))))(((((((((..........))))))))))))))).)))))))))))))). ( -30.00)
>DroEre_CAF1 29871 106 - 1
AGAUUUGGGUGUCAAUAAGUCGAUAACCAGCGCUCCUAUUAAUCUAUGCAGAUUAAAAAUCCAUUCCUCUACUUUAGUGGGUUUCUGCUUCGUCGAUACCCCGAAA
...((((((.((......((((((....(((.......(((((((....)))))))(((((((((..........)))))))))..)))..)))))))))))))). ( -24.80)
>DroYak_CAF1 18470 105 - 1
AGAU-UGGGUGUCAAUAAAUCGAUAACCAGCACUCCUAUUAAUCUAUGCAGAUUAAAUAUCCAUUCCUCUACUUUAGUGGGUUUUUGGUUCGUCGAUACCCCGAAA
....-.(((((((.(..((((((.((((..........(((((((....))))))).............(((....))))))).))))))..).)))))))..... ( -25.60)
>consensus
AGAUUUGGGUGUCAAUAAAUCGAUAACCAGCGCUCCUAUUAAUCUAUGCAGAUUAAAAAUCCAUUCCUCUAUUUUAGUGGGUUUCUGGUUCGUCGAUACCCCGAAA
...((((((.((......((((((((((((........(((((((....)))))))(((((((((..........))))))))))))))).)))))))))))))). (-26.70 = -27.18 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:01 2006