Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,645,435 – 12,645,529 |
Length | 94 |
Max. P | 0.998360 |
Location | 12,645,435 – 12,645,529 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.07 |
Mean single sequence MFE | -42.50 |
Consensus MFE | -39.12 |
Energy contribution | -38.96 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.92 |
SVM decision value | 3.08 |
SVM RNA-class probability | 0.998360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12645435 94 + 27905053 AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCAGUGCGGGAUCAACGAUUAUCUGCCAGA-GGCGGAUCUUCGCGCCCCCAGAAUC-----CCCUGCC .....((..(((((..(((.(((.......))))))..)(((.....(((..(((((((...-)))))))..)))....))).....)-----)))..)) ( -43.60) >DroSec_CAF1 21917 94 + 1 AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCAGUGCGGGAUCAACGAUUAUCUGCGAGA-GGCGGAUCUUCGCGCCCCCAGAAUC-----CCCUGCC .....((..(((((..(((.(((.......))))))..)(((.....(((..((((((....-.))))))..)))....))).....)-----)))..)) ( -42.00) >DroSim_CAF1 19880 94 + 1 AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCAGUGCGGGAUCAACGAUUAUCUGCGAGA-GGCGGAUCUUCGCGCCCCCAGAAUC-----CCCUGCC .....((..(((((..(((.(((.......))))))..)(((.....(((..((((((....-.))))))..)))....))).....)-----)))..)) ( -42.00) >DroEre_CAF1 25203 95 + 1 AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCAGUGCGGGAUCAACGAUUAUCUGCGAGAUGGCGGAUCUUCGCGCCCCCAGAAUC-----CCCUGCC .....((..(((((..(((.(((.......))))))..)(((.....(((..((((((......))))))..)))....))).....)-----)))..)) ( -42.20) >DroYak_CAF1 13714 100 + 1 AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCGGUGCGGGAUCAACGAUUAUCUGCGAGAUGGCGGAUCUUCGCGCCCCCAGAAUGACGCGCCCUGCC ....(((((((((((((.((((((((((.((....))..)))))).......((((((......)))))))))))))))))).(.....).))))).... ( -42.70) >consensus AAGUGGGUGGGGGGUGCUGAGGGAUCUUAACCCCAGUGCGGGAUCAACGAUUAUCUGCGAGA_GGCGGAUCUUCGCGCCCCCAGAAUC_____CCCUGCC .....((..(((.(..(((.(((.......))))))..)(((.....(((..((((((......))))))..)))....)))...........)))..)) (-39.12 = -38.96 + -0.16)
Location | 12,645,435 – 12,645,529 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.07 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -31.55 |
Energy contribution | -31.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.85 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12645435 94 - 27905053 GGCAGGG-----GAUUCUGGGGGCGCGAAGAUCCGCC-UCUGGCAGAUAAUCGUUGAUCCCGCACUGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ((..(((-----(...(((((((.((((..(((.(((-...))).)))..))))(((((((.....)))))))....)))))))...))))..))..... ( -38.70) >DroSec_CAF1 21917 94 - 1 GGCAGGG-----GAUUCUGGGGGCGCGAAGAUCCGCC-UCUCGCAGAUAAUCGUUGAUCCCGCACUGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ((..(((-----(...(((((((.((((.((......-)))))).....(((.((((((((.....))))))))))))))))))...))))..))..... ( -37.00) >DroSim_CAF1 19880 94 - 1 GGCAGGG-----GAUUCUGGGGGCGCGAAGAUCCGCC-UCUCGCAGAUAAUCGUUGAUCCCGCACUGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ((..(((-----(...(((((((.((((.((......-)))))).....(((.((((((((.....))))))))))))))))))...))))..))..... ( -37.00) >DroEre_CAF1 25203 95 - 1 GGCAGGG-----GAUUCUGGGGGCGCGAAGAUCCGCCAUCUCGCAGAUAAUCGUUGAUCCCGCACUGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ((..(((-----(...(((((((.((((.(((.....))))))).....(((.((((((((.....))))))))))))))))))...))))..))..... ( -37.70) >DroYak_CAF1 13714 100 - 1 GGCAGGGCGCGUCAUUCUGGGGGCGCGAAGAUCCGCCAUCUCGCAGAUAAUCGUUGAUCCCGCACCGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ((..(((.(.((....(((((((.((((.(((.....))))))).....(((.(((((((((...))))))))))))))))))).)).))))..)).... ( -35.00) >consensus GGCAGGG_____GAUUCUGGGGGCGCGAAGAUCCGCC_UCUCGCAGAUAAUCGUUGAUCCCGCACUGGGGUUAAGAUCCCUCAGCACCCCCCACCCACUU ....(((.........(((((((.((((..(((.((......)).)))..))))(((((((.....)))))))....))))))).........))).... (-31.55 = -31.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:59 2006