Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,631,755 – 12,631,856 |
Length | 101 |
Max. P | 0.995103 |
Location | 12,631,755 – 12,631,856 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 72.88 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -11.10 |
Energy contribution | -11.30 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.27 |
Mean z-score | -2.91 |
Structure conservation index | 0.38 |
SVM decision value | 2.54 |
SVM RNA-class probability | 0.995103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12631755 101 - 27905053 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUGUACUCUGCCAAAACCAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((.(((((((--(((.......))))))))))...))))).))))....-------------- ( -33.40) >DroPse_CAF1 4868 109 - 1 AGUUUU-CGUGUCGGUUAAACUGUCCCA-AAGGCGAUCAUCGACGCGAUAAGGCAACAUUUGAA------AUAUUUUAUUUCAUAUGCUGUACGAAAAAAAUUCUCCCAAUACAUAA .....(-(((((((((.....((((...-..))))...))))))))))....(((.(((.((((------(((...))))))).))).))).......................... ( -23.30) >DroSec_CAF1 8137 101 - 1 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUAUGCGCUGCCAAAACCAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((((((((((--(((.......))))))))..)))))))).))))....-------------- ( -38.80) >DroSim_CAF1 5979 101 - 1 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUAUGCGCUGCCAAAACAAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((((((((((--(((.......))))))))..)))))))).))))....-------------- ( -39.70) >DroMoj_CAF1 4855 95 - 1 AGUUUC-GGCG----CUAAACUGGCCCCAAAGACGAUCAUCGAUGCGAUAAGGCACCAUUCCGAGCAUA-AUAUUCCACUACAUAUGAG-UGCAGAAACAAA--------------- .(((((-.(((----((....((..........((.....))((((.....((.......))..)))).-...........))....))-))).)))))...--------------- ( -18.10) >DroPer_CAF1 9471 109 - 1 AGUUUU-UGUGUCGGUUAAACUGUCCCA-AAGGCGAUCAUCGACGCGAUAAGGCAACAUUUGAA------AUAUUUUAUUUCAUAUGCUGUACGAAUAAAAUUCUCCCAAUCCAUAA .....(-(((((((((.....((((...-..))))...))))))))))....(((.(((.((((------(((...))))))).))).))).......................... ( -21.20) >consensus AGUUUC_UGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCACGUGAA__AUA_AUAUUUUAUGUCAUAUGCGCUGCCAAAACAAUU______________ .((((..(((((((.......((((......)))).....)))))))...))))............................................................... (-11.10 = -11.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:54 2006