Locus 483

Sequence ID 3R_DroMel_CAF1
Location 1,799,429 – 1,799,549
Length 120
Max. P 0.511584
window780

overview

Window 0

Location 1,799,429 – 1,799,549
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -29.36
Consensus MFE -26.83
Energy contribution -27.39
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.91
SVM decision value -0.04
SVM RNA-class probability 0.511584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1799429 120 + 27905053
AAUUCCUUAGUCCAGCUGGCUCCGUUCUCUGUAUGGCGCCCUUUCUCUAAAUUAGAUUCCAAGAAAUACAACAAAAUCUGAAGAAAUAAUUGCAUUUAUAUGAGAGGCCGGAGAAAUGGA
..........((((.....(((((..((((((((((((...(((((.....(((((((................))))))))))))....)))...))))).))))..)))))...)))) ( -26.29)
>DroSec_CAF1 110075 120 + 1
AAUUCCUUAGUCCAGCUGGCUCCGUUCCCCGAAUGGCGCCCUUUCUCUAAAUUAGAUUCCUAGAAAUACAACAAAAUCUGAACAUAUAAUUGCAUUUAUAUGAGAGGCCGGAGAAAUGGG
....((((..(((.((.(((.((((((...)))))).)))....((((...(((((((................))))))).(((((((......))))))))))))).)))..)).)). ( -29.99)
>DroSim_CAF1 112960 120 + 1
AAUUCCUUAGUCCAGCUGGCUCCGUUCUCUGAACGGCGCCCUUUCUCUAAAUUAGAUUCCUAGAAAUACAACAAAAUCUGAACAUAUAAUUGCAUUUAUAUGAGAGGCCGGAGAAAUGGG
....((((..(((.((.(((.((((((...)))))).)))....((((...(((((((................))))))).(((((((......))))))))))))).)))..)).)). ( -31.79)
>consensus
AAUUCCUUAGUCCAGCUGGCUCCGUUCUCUGAAUGGCGCCCUUUCUCUAAAUUAGAUUCCUAGAAAUACAACAAAAUCUGAACAUAUAAUUGCAUUUAUAUGAGAGGCCGGAGAAAUGGG
...(((((..(((.((.(((.((((((...)))))).)))....((((...(((((((................))))))).(((((((......))))))))))))).)))..)).))) (-26.83 = -27.39 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:17 2006