Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,623,787 – 12,623,907 |
Length | 120 |
Max. P | 0.599815 |
Location | 12,623,787 – 12,623,907 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -29.48 |
Energy contribution | -28.60 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.13 |
Mean z-score | -1.49 |
Structure conservation index | 0.98 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12623787 120 - 27905053 UCAGUAGUCAACUUCAUCAUCGCGAUGUCGAAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU ............(((..(((.(((((((.(((((((((((.....)))....((....)).....))))))))..((((...((((....))))))))..))))))).)))...)))... ( -28.30) >DroSec_CAF1 166 120 - 1 UCAGUAGUCAACUUAAUCAUCGCGAUGUCGGAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU .................(((.(((((((.(((((((((((.....)))....((....)).....))))))))..((((...((((....))))))))..))))))).)))......... ( -26.90) >DroEre_CAF1 3147 120 - 1 UCAGAAGUCAACUUCAUCAUCGCGACGUCGGGGUGGCUUCUACCUGAACUAAUGAGCACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU ((.((((....))))..(((.(((((((.(((((((((......((..(....)..))......)))))))))..((((...((((....))))))))..))))))).)))...)).... ( -35.40) >consensus UCAGUAGUCAACUUCAUCAUCGCGAUGUCGGAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU .................(((.(((((((.(((((((((......((..(....)..))......)))))))))..((((...((((....))))))))..))))))).)))......... (-29.48 = -28.60 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:53 2006