Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,623,155 – 12,623,274 |
Length | 119 |
Max. P | 0.650462 |
Location | 12,623,155 – 12,623,274 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -23.17 |
Energy contribution | -23.05 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.62 |
Structure conservation index | 0.89 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12623155 119 - 27905053 CUUGCAAGCCAUUCAAAAUUUUAAAGGGGAAAUGCAGCGAAAGGAUGAUUCUCAUUUUAAUUGGUCUCUGAAUUGCACAUUCGCCAGGGCAUUAAAAUGCCACCAAAAAAGAAUCAACA .(((((..((.................))...)))))(....)..(((((((........(((((....((((.....)))))))))(((((....)))))........)))))))... ( -22.23) >DroSec_CAF1 105663 119 - 1 CUUGCAACCGAUUCAAAAUAUUAAAGGGGAAAUUCAGCGAAAGGAUGAUUCUCAUUUUAAUUGGUCUCUGAAUUGCACAAUCGCCAGGGCAUUAAAAUGCCACCAAAAAAGAAUCAACA .........(((((......(((((((((((..(((.(....)..)))))))).))))))(((((..(((....((......)))))(((((....))))))))))....))))).... ( -27.20) >DroSim_CAF1 106345 119 - 1 CUUGCAAGCGAUUCAAAAUAUUAAAGGGGAAAUUCAGCGAAAGGAUGAUUCUCAUUUUAAUUGGUCUCUGAAUUGCACAUUCGCCAGGGCAUUAAAAUGCCACCAAAAAAGAAUCAACA .........(((((......(((((((((((..(((.(....)..)))))))).))))))(((((..(((....((......)))))(((((....))))))))))....))))).... ( -27.20) >DroYak_CAF1 105918 118 - 1 CUUGCAAGCGAUUUAGAAUAGC-AAGGGGAAAUGCAGCGAAAGGAUGAUUCCCAUUUUAAUUGGUCUCUGAAUUGCACAUUCGCCAGGGCAUUAAAAUGCCACCAAAAAAGAAUCAACA .......((((((((((..(.(-((.(((((...((.(....)..)).))))).......))).).))))))))))...........(((((....))))).................. ( -27.30) >consensus CUUGCAAGCGAUUCAAAAUAUUAAAGGGGAAAUGCAGCGAAAGGAUGAUUCUCAUUUUAAUUGGUCUCUGAAUUGCACAUUCGCCAGGGCAUUAAAAUGCCACCAAAAAAGAAUCAACA .........(((((............(((((...((.(....)..)).))))).......(((((..(((....((......)))))(((((....))))))))))....))))).... (-23.17 = -23.05 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:52 2006