Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,622,779 – 12,622,869 |
Length | 90 |
Max. P | 0.719272 |
Location | 12,622,779 – 12,622,869 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -19.39 |
Energy contribution | -20.28 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -1.33 |
Structure conservation index | 0.76 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12622779 90 + 27905053 ----------------------------CAGCAGCUCCGAAUGUGGACGAAAACUUUUUAGACUUUUUGUCGACUUUUCGCAUUUUUAGUUGCGGCCAAGUGGAAAGUGCUGCCUCAG-- ----------------------------..(((((((((...((.((((((((.((....)).)))))))).))...(((((........))))).....))))....))))).....-- ( -25.00) >DroPse_CAF1 111760 118 + 1 CUCCUCCUCUUCUUUUCUCCUCUCCUUGAAGCCACCCCGAAAGCGGACGAAAAGUUUUUAGACUUUUUGUCGACUUUUCGCAUUUCUAGUUGCGGCCAAGUUGAAAGUGCUGCCUCAG-- ..........................(((.((((((((....).)).(((((((((....)))))))))(((((((.(((((........)))))..)))))))..)))..)).))).-- ( -27.70) >DroSim_CAF1 105951 92 + 1 ----------------------------CAGCAGCUCCGAAUGUGGACGAAAACUUUUUAGACUUUUUGUCGACUUUUCGCAUUUUUAGUUGCGGACAAGUGGAAAGUGCUGCCUCAGCA ----------------------------..(((((((((....)))).....(((((((.(((.....))).((((((((((........)))))).))))))))))))))))....... ( -26.70) >DroYak_CAF1 105512 90 + 1 ----------------------------CAGCAGCUCCGAAUGUGAACGAAAACUUUUUAGACUUUUUGUCGACUUUUCGCAUUUUUAGUUGCGGCCAAGUGGAAAGUGCUGCCUCAG-- ----------------------------..((((((..(((((((((.(((.....))).(((.....))).....)))))))))..))))))(((..(((.......))))))....-- ( -22.90) >DroAna_CAF1 101052 90 + 1 ----------------------------CAGCAGCUACGAAUGUGGACGAAAACUUUUUAGACUUUUUGUCGACUUUUCGCAUUUUUAGUUGCGGCCAAGUUGAAAGUGCUGCCUCAG-- ----------------------------..(((((((.(((((((((((((((.((....)).)))))))).......))))))).)))))))(((..(((.......))))))....-- ( -25.91) >DroPer_CAF1 118038 118 + 1 CUCCUCCUCUUCUUUUCUCCUCUCCUUCAAGCCACCCCGAAAGCGGACGAAAAGUUUUUAGACUUUUUGUCGACUUUUCGCAUUUCUAGUUGCGGCCAAGUUGAAAGUGCUGCCUCAG-- .............................((((.((.(....).)).(((((((((....)))))))))(((((((.(((((........)))))..)))))))..).))).......-- ( -25.50) >consensus ____________________________CAGCAGCUCCGAAUGUGGACGAAAACUUUUUAGACUUUUUGUCGACUUUUCGCAUUUUUAGUUGCGGCCAAGUGGAAAGUGCUGCCUCAG__ ..............................((((((..(((((((((((((((.((....)).)))))))).......)))))))..))))))(((..(((.......))))))...... (-19.39 = -20.28 + 0.89)
Location | 12,622,779 – 12,622,869 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -17.44 |
Energy contribution | -17.50 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.06 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12622779 90 - 27905053 --CUGAGGCAGCACUUUCCACUUGGCCGCAACUAAAAAUGCGAAAAGUCGACAAAAAGUCUAAAAAGUUUUCGUCCACAUUCGGAGCUGCUG---------------------------- --....(((((((((((..((((...((((........))))..)))).(((.....)))...))))).....(((......))))))))).---------------------------- ( -22.30) >DroPse_CAF1 111760 118 - 1 --CUGAGGCAGCACUUUCAACUUGGCCGCAACUAGAAAUGCGAAAAGUCGACAAAAAGUCUAAAAACUUUUCGUCCGCUUUCGGGGUGGCUUCAAGGAGAGGAGAAAAGAAGAGGAGGAG --...........(((((.....((((((..........(((((((((.(((.....))).....)))))))))(((....))).)))))).....)))))................... ( -28.50) >DroSim_CAF1 105951 92 - 1 UGCUGAGGCAGCACUUUCCACUUGUCCGCAACUAAAAAUGCGAAAAGUCGACAAAAAGUCUAAAAAGUUUUCGUCCACAUUCGGAGCUGCUG---------------------------- ......(((((((((((..((((...((((........))))..)))).(((.....)))...))))).....(((......))))))))).---------------------------- ( -22.30) >DroYak_CAF1 105512 90 - 1 --CUGAGGCAGCACUUUCCACUUGGCCGCAACUAAAAAUGCGAAAAGUCGACAAAAAGUCUAAAAAGUUUUCGUUCACAUUCGGAGCUGCUG---------------------------- --....(((((((((((..((((...((((........))))..)))).(((.....)))...))))).((((........)))))))))).---------------------------- ( -21.60) >DroAna_CAF1 101052 90 - 1 --CUGAGGCAGCACUUUCAACUUGGCCGCAACUAAAAAUGCGAAAAGUCGACAAAAAGUCUAAAAAGUUUUCGUCCACAUUCGUAGCUGCUG---------------------------- --....((((((.........((((......))))...((((((..((.(((.((((.(......).)))).))).)).)))))))))))).---------------------------- ( -20.10) >DroPer_CAF1 118038 118 - 1 --CUGAGGCAGCACUUUCAACUUGGCCGCAACUAGAAAUGCGAAAAGUCGACAAAAAGUCUAAAAACUUUUCGUCCGCUUUCGGGGUGGCUUGAAGGAGAGGAGAAAAGAAGAGGAGGAG --...........(((((.((((...((((........))))..)))).(((.....)))......((((((.(((.((((((((....))))))))...)))))))))....))))).. ( -29.90) >consensus __CUGAGGCAGCACUUUCAACUUGGCCGCAACUAAAAAUGCGAAAAGUCGACAAAAAGUCUAAAAAGUUUUCGUCCACAUUCGGAGCUGCUG____________________________ ......((((((((((((.((((...((((........))))..)))).))....))))..........((((........))))))))))............................. (-17.44 = -17.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:51 2006