Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,621,506 – 12,621,606 |
Length | 100 |
Max. P | 0.995296 |
Location | 12,621,506 – 12,621,606 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.94 |
Mean single sequence MFE | -31.95 |
Consensus MFE | -23.85 |
Energy contribution | -24.48 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.75 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12621506 100 + 27905053 AAAG---A---AAGAAGGAAGCGAAAUGCCUGAGAUUCCUGCCCUUUUUGGGAAGGUGGAGUCGGAGCA-----------AGGCAUUCAUAUUUAUGCCUGGCCAGGACAUCGGAUG ....---.---..........(((..((((((.((((((..(((.....))).....))))))...((.-----------((((((........)))))).)))))).))))).... ( -32.10) >DroSec_CAF1 103975 100 + 1 AAAG---A---AAGAAAGAAGCGAAAUGCCUGAGAUUCCUGCCCUUUUUGGGAAGGUGGAGUCGGAGCA-----------AGGCAUUCAUAUUUAUGCCUGGCCAGGACAUCGGAUG ....---.---..........(((..((((((.((((((..(((.....))).....))))))...((.-----------((((((........)))))).)))))).))))).... ( -32.10) >DroSim_CAF1 104684 100 + 1 AAAG---A---AAGAAAGGAGCGAAAUGCCUGAGAUUCCUGCCCUUUUUGGGAAGGUGGAGUCGGGGCA-----------AGGCAUUCAUAUUUAUGCCUGGCCAGGACAUCGGAUG ....---.---..........(((..(((((..((((((..(((.....))).....))))))..(((.-----------((((((........)))))).)))))).))))).... ( -33.10) >DroYak_CAF1 104176 116 + 1 AAAGGAGAAAGAAGAAAGGGGAGAAAUGCCUGAGAUUCCUGCCCUU-UUGGGAAGGUGUAGCAGGAGCAGGAGCAGGAGCAGACAUUCAUAUUUAUGUCUGGCCAGGACAUCGGAUG .................(((.(....).)))(((.((((((((((.-(((.(....).))).))).)))))))).((..(((((((........))))))).))......))..... ( -30.50) >consensus AAAG___A___AAGAAAGAAGCGAAAUGCCUGAGAUUCCUGCCCUUUUUGGGAAGGUGGAGUCGGAGCA___________AGGCAUUCAUAUUUAUGCCUGGCCAGGACAUCGGAUG .....................(((..((((((.((((((..(((.....))).....)))))).................((((((........))))))...)))).))))).... (-23.85 = -24.48 + 0.62)
Location | 12,621,506 – 12,621,606 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.94 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -23.62 |
Energy contribution | -23.25 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.05 |
Mean z-score | -3.17 |
Structure conservation index | 0.85 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12621506 100 - 27905053 CAUCCGAUGUCCUGGCCAGGCAUAAAUAUGAAUGCCU-----------UGCUCCGACUCCACCUUCCCAAAAAGGGCAGGAAUCUCAGGCAUUUCGCUUCCUUCUU---U---CUUU .....((((.((((((.((((((........))))))-----------.))..........(((.(((.....))).))).....)))))))).............---.---.... ( -27.10) >DroSec_CAF1 103975 100 - 1 CAUCCGAUGUCCUGGCCAGGCAUAAAUAUGAAUGCCU-----------UGCUCCGACUCCACCUUCCCAAAAAGGGCAGGAAUCUCAGGCAUUUCGCUUCUUUCUU---U---CUUU .....((((.((((((.((((((........))))))-----------.))..........(((.(((.....))).))).....)))))))).............---.---.... ( -27.10) >DroSim_CAF1 104684 100 - 1 CAUCCGAUGUCCUGGCCAGGCAUAAAUAUGAAUGCCU-----------UGCCCCGACUCCACCUUCCCAAAAAGGGCAGGAAUCUCAGGCAUUUCGCUCCUUUCUU---U---CUUU .....((((((..(((.((((((........))))))-----------.)))..)))....(((.(((.....))).))).)))...(((.....)))........---.---.... ( -27.40) >DroYak_CAF1 104176 116 - 1 CAUCCGAUGUCCUGGCCAGACAUAAAUAUGAAUGUCUGCUCCUGCUCCUGCUCCUGCUACACCUUCCCAA-AAGGGCAGGAAUCUCAGGCAUUUCUCCCCUUUCUUCUUUCUCCUUU .....((((.(((((.(((((((........))))))).((((((....((....))....((((.....-))))))))))...)))))))))........................ ( -30.10) >consensus CAUCCGAUGUCCUGGCCAGGCAUAAAUAUGAAUGCCU___________UGCUCCGACUCCACCUUCCCAAAAAGGGCAGGAAUCUCAGGCAUUUCGCUCCUUUCUU___U___CUUU .....((((.(((((..((((((........))))))........................(((.(((.....))).)))....)))))))))........................ (-23.62 = -23.25 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:49 2006