Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,607,278 – 12,607,376 |
Length | 98 |
Max. P | 0.735356 |
Location | 12,607,278 – 12,607,376 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -21.65 |
Energy contribution | -21.52 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.21 |
Mean z-score | -1.45 |
Structure conservation index | 0.84 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12607278 98 + 27905053 AAAAGAGGCGGUUUCUGACCG------AAGAGUAUGGGACGCACAUUUGGCCAAAUAUCAUUUUCUUGGCCAAGUUUCCGCCAUAAAUUUACAUGUCCAGAGC---A ......(((((.((((.....------.))))............((((((((((...........))))))))))..))))).....................---. ( -23.60) >DroVir_CAF1 98239 99 + 1 GAGAG-GCCGGAUUCUGUCCGUAACAGCACA--AUUUACC----ACUUUGCCAAAAAUC-UUUUCUUAGCCAAGUUCUUGGCAUAAGCUCAAGUGUCGAGUGUUCAA (((((-(.(((((...))))).....(((..--.......----....))).......)-)))))...(((((....)))))....((((.......))))...... ( -18.52) >DroSec_CAF1 89795 94 + 1 AAAAGAGGCGGUUUCUGACCG------AAGAGGAUGGGAC----ACUUGGCCAAAUAUCAUUUUCUUGGCCAAGUUUCCGCCAUAAAUUUACAUGUCCAGAGC---A ......(((((((...)))).------.........(((.----((((((((((...........)))))))))).)))))).....................---. ( -28.50) >DroSim_CAF1 90085 94 + 1 AAAAGAGGCGGUUUCUGACCG------AAGAGGAUGGGAU----ACUUGGCCAAAUAUCAUUUUCUUGGCCAAGUUUCCGCCAUAAAUUUACAUGUCCAGAGC---A ......(((((((...)))).------.........(((.----((((((((((...........)))))))))).)))))).....................---. ( -28.70) >DroEre_CAF1 88445 94 + 1 AAAAGAGGCGGUAUCUGACCG------AAGAGGAUGGGAC----ACUUGGCCAAAUAUCAUUUUCUUGGCCAAGUUUCCGCCAUAAAUUUACUAGUCCGGAGC---A ......((((((.....))).------.........(((.----((((((((((...........)))))))))).)))))).....................---. ( -28.40) >DroYak_CAF1 89072 94 + 1 GAAAGAGGCGGUUUUUGACCG------AAGAGGAUGGGAC----ACUUGGCCAAAUAUCAUUUUCCUGGCCAAGUUUCCGCCAUAAAUUUACUAGUCCAGAGC---A ......(((((((...)))).------.........(((.----(((((((((.............))))))))).)))))).....................---. ( -27.42) >consensus AAAAGAGGCGGUUUCUGACCG______AAGAGGAUGGGAC____ACUUGGCCAAAUAUCAUUUUCUUGGCCAAGUUUCCGCCAUAAAUUUACAUGUCCAGAGC___A ......((((((.....)))................(((.....((((((((((...........)))))))))).))))))......................... (-21.65 = -21.52 + -0.13)
Location | 12,607,278 – 12,607,376 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -21.59 |
Energy contribution | -21.15 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12607278 98 - 27905053 U---GCUCUGGACAUGUAAAUUUAUGGCGGAAACUUGGCCAAGAAAAUGAUAUUUGGCCAAAUGUGCGUCCCAUACUCUU------CGGUCAGAAACCGCCUCUUUU .---.....................(((((....(((((((((.........)))))))))......(.((.(......)------.)).).....)))))...... ( -21.60) >DroVir_CAF1 98239 99 - 1 UUGAACACUCGACACUUGAGCUUAUGCCAAGAACUUGGCUAAGAAAA-GAUUUUUGGCAAAGU----GGUAAAU--UGUGCUGUUACGGACAGAAUCCGGC-CUCUC ..............(((...((((.(((((....)))))))))..))-)......(((..((.----.(((...--..)))..)).((((.....))))))-).... ( -23.50) >DroSec_CAF1 89795 94 - 1 U---GCUCUGGACAUGUAAAUUUAUGGCGGAAACUUGGCCAAGAAAAUGAUAUUUGGCCAAGU----GUCCCAUCCUCUU------CGGUCAGAAACCGCCUCUUUU .---((...(((((((......))))(.(((.(((((((((((.........)))))))))))----.)))).)))....------.(((.....)))))....... ( -27.00) >DroSim_CAF1 90085 94 - 1 U---GCUCUGGACAUGUAAAUUUAUGGCGGAAACUUGGCCAAGAAAAUGAUAUUUGGCCAAGU----AUCCCAUCCUCUU------CGGUCAGAAACCGCCUCUUUU .---((...(((((((......))))(.(((.(((((((((((.........)))))))))))----.)))).)))....------.(((.....)))))....... ( -27.00) >DroEre_CAF1 88445 94 - 1 U---GCUCCGGACUAGUAAAUUUAUGGCGGAAACUUGGCCAAGAAAAUGAUAUUUGGCCAAGU----GUCCCAUCCUCUU------CGGUCAGAUACCGCCUCUUUU .---.....................(((((..(((((((((((.........)))))))))))----.....(((..(..------..)...))).)))))...... ( -27.00) >DroYak_CAF1 89072 94 - 1 U---GCUCUGGACUAGUAAAUUUAUGGCGGAAACUUGGCCAGGAAAAUGAUAUUUGGCCAAGU----GUCCCAUCCUCUU------CGGUCAAAAACCGCCUCUUUC .---.....................((((((.(((((((((((.........)))))))))))----.))).........------.(((.....))))))...... ( -26.40) >consensus U___GCUCUGGACAUGUAAAUUUAUGGCGGAAACUUGGCCAAGAAAAUGAUAUUUGGCCAAGU____GUCCCAUCCUCUU______CGGUCAGAAACCGCCUCUUUU .........................((((((.(((((((((((.........))))))))))).....)))................(((.....))))))...... (-21.59 = -21.15 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:44 2006