Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,600,771 – 12,600,872 |
Length | 101 |
Max. P | 0.999077 |
Location | 12,600,771 – 12,600,872 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 63.88 |
Mean single sequence MFE | -22.68 |
Consensus MFE | -14.09 |
Energy contribution | -14.15 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.31 |
Mean z-score | -2.27 |
Structure conservation index | 0.62 |
SVM decision value | 3.36 |
SVM RNA-class probability | 0.999077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12600771 101 - 27905053 CAAAUAGAUCUAUUAUUUCU-UUUUUUAGGGAAAAUAUUUCACCACGAUCGUUUACGAAGGCGCCUACAUUCUGUGCCUUCGCAAC--AG------AUCGAUUUGCGCUU------ (((((.((..((((.(..((-......))..).))))..))....(((((.....(((((((((.........)))))))))....--.)------))))))))).....------ ( -28.20) >DroSec_CAF1 83352 90 - 1 CAAAUAGUUCUAAUAUUU------------------AUAUCACAACGAUCGUUUGCGAAGGCGGCUACAAUCUAUGCCUUCGUAAA--AU------AUCGAUUUACGCUUCGUCCA ..................------------------.........((((..((((((((((((...........))))))))))))--..------))))................ ( -20.80) >DroSim_CAF1 83657 84 - 1 CAAAUAGUUCUAAUAUUU------------------AUAUCACAAUGAUCGUUUGCGAAGGCGGCUACAAUCUAUGCCUUCGUAAA--AU------AUCGAUUUACGCUU------ ..................------------------.........((((..((((((((((((...........))))))))))))--..------))))..........------ ( -18.80) >DroEre_CAF1 81971 102 - 1 CAAAUAGUUCUGAUGUUCAUAGUUUUGCGGGAAAAUUUUACACACCGAUCUCUUGUGAAGGCCGCUACUAUCCAUGCUUUCGCAAGGAGGCUCCAUUUCGAU-------------- ...(((((..((.(.(((((((.....(((..............))).....))))))).).))..)))))....((((((....))))))...........-------------- ( -22.94) >consensus CAAAUAGUUCUAAUAUUU__________________AUAUCACAACGAUCGUUUGCGAAGGCGGCUACAAUCUAUGCCUUCGCAAA__AG______AUCGAUUUACGCUU______ .............................................((((..((((((((((((...........))))))))))))..........))))................ (-14.09 = -14.15 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:38 2006