Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,799,032 – 1,799,123 |
Length | 91 |
Max. P | 0.718532 |
Location | 1,799,032 – 1,799,123 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 88.13 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -15.50 |
Energy contribution | -18.18 |
Covariance contribution | 2.68 |
Combinations/Pair | 1.05 |
Mean z-score | -2.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1799032 91 + 27905053 AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCAUCCGUGAAACAGCAAAAAUU ......((((((......))))))......(((((((.......(((....)))(((.((.....)).)))...))))))).......... ( -26.00) >DroSec_CAF1 109690 81 + 1 AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGC----------CUGGUCCGUCCGUGAAACAGCAAAAAUU ......((((((......))))))......(((((((........((....))----------..((.....))))))))).......... ( -18.60) >DroSim_CAF1 112565 91 + 1 AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU ......((((((......))))))......(((((((.......(((....))).((.((.....)).))....))))))).......... ( -25.30) >DroEre_CAF1 105728 91 + 1 AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU ......((((((......))))))......(((((((.......(((....))).((.((.....)).))....))))))).......... ( -25.30) >DroYak_CAF1 108725 76 + 1 AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGU---------------UGCUCCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU ......((((((......))))))......((---------------((.(((((((.((.....)).)))..)).))..))))....... ( -17.80) >consensus AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU ......((((((......))))))......(((((((.......(((....)))(((.((.....)).)))...))))))).......... (-15.50 = -18.18 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:16 2006