Locus 4818

Sequence ID 3R_DroMel_CAF1
Location 12,594,147 – 12,594,267
Length 120
Max. P 0.979362
window7897

overview

Window 7

Location 12,594,147 – 12,594,267
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -21.89
Consensus MFE -16.62
Energy contribution -18.22
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.99
Structure conservation index 0.76
SVM decision value 1.84
SVM RNA-class probability 0.979362
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12594147 120 - 27905053
AAACUAAUACCUGUAAAUCGAAUUAAUCAACCUUACGAGUUUUUCGAUAUCCCACUUCUUUUCAGCCAAUAUAUGUCCCUAGUUUAUCAUUAUAAAUUAUGGCCACUUUUGGCUGACGCC
................((((((....((........))....)))))).............((((((((....((.((.((((((((....)))))))).)).))...)))))))).... ( -25.00)
>DroSec_CAF1 76611 120 - 1
AAACCAAUACCUGUAAAUCGAAUCAAUAAACCUAACGAGUUUUUCGAUAUCCCACUUCUUUUCAGCCAAUAUAUAUCCCUAGUUUAUCAUUAUAAAUUAUGGCCAAUUUUGGCUGACGCC
................((((((.....(((((....).)))))))))).............((((((((.......((.((((((((....)))))))).))......)))))))).... ( -23.32)
>DroSim_CAF1 76784 120 - 1
AAACCAAUACCUGUAAAUCGAAUCAAUCAACCUAACGAGUUUUUCGAUAUCCCACUUCUUUUCAGCCAAUAUAUGUCCCUAGUUUAUCAUUAUAAAUUAUGGCCACUUUUGGCUGACGCC
................((((((....((........))....)))))).............((((((((....((.((.((((((((....)))))))).)).))...)))))))).... ( -25.00)
>DroEre_CAF1 75556 120 - 1
AUUCCAAUACCUAUAAAUCGAAUCAAUCAACUCACCGAGUUUCCCUAUUUCCCACUUCUUUUCAGCCAAUAUAAGUCCCUAGUUUAUCAUUACAAAUUAUGGCCACUUUCGGCCGACGCC
...................(((......(((((...))))).......))).......................(((..((((((........)))))).((((......)))))))... ( -13.12)
>DroYak_CAF1 75802 120 - 1
AUUCCAAUACCUAUAAAUCGAAUCAAUCAACUUGCCGAGUUUUUCGAUUUCCUACUUCUUUUCAGCCAAUAUAAGUCCCUAGUUUAUCAUUAUAAAUUAUGGCCACUUUCGGCUGACGCC
..............((((((((....((........))....))))))))...........((((((.....((((((.((((((((....)))))))).))..))))..)))))).... ( -23.00)
>consensus
AAACCAAUACCUGUAAAUCGAAUCAAUCAACCUAACGAGUUUUUCGAUAUCCCACUUCUUUUCAGCCAAUAUAUGUCCCUAGUUUAUCAUUAUAAAUUAUGGCCACUUUUGGCUGACGCC
................((((((....((........))....)))))).............((((((((.......((.((((((((....)))))))).))......)))))))).... (-16.62 = -18.22 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:35 2006