Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,590,929 – 12,591,035 |
Length | 106 |
Max. P | 0.705867 |
Location | 12,590,929 – 12,591,035 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.15 |
Mean single sequence MFE | -18.33 |
Consensus MFE | -14.78 |
Energy contribution | -14.75 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.05 |
Structure conservation index | 0.81 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12590929 106 - 27905053 ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAAACCGUGACAGUUUCGUUA-AAUGCUUUUUCUUUAUCUGACGUAUUCCUCUCCUUUCGGUUUUAUGC .((((((((((.....))))..((((((((((((.........)))))..)))))))))-))))................((((..((.........))...)))). ( -17.70) >DroVir_CAF1 80611 99 - 1 ACAUUUAUUGGGCAAUCCAAUCACGGACUUCACGUUCGCA-GUCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUCU-------CUUCUCUUUUCAUUUCAUCU .((((((((((.....))))).((((((((((((......-..))))).)).)))))..)))))................-------.................... ( -14.50) >DroPse_CAF1 76385 106 - 1 ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCA-GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCAUUGUUGGGGUUUGUUUC (((((((((((.....))))).((((((((((((.(....-).)))))..)))))))..)))))).............(((....(((((....)))))...))).. ( -22.00) >DroGri_CAF1 78992 100 - 1 ACAUUUAUUGGGCAAUCCAAUCACGGAAUUCACGUUCGCA-GUCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUUU------CCUUCCCUUUCCAUUUCAUUU .((((((((((.....))))).((((((((((((......-..)))))..)))))))..)))))................------..................... ( -15.40) >DroAna_CAF1 71707 101 - 1 ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCGGGCCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGAAUUAUUUUUCU------GACUUCAUGU .((((((((((.....))))).((((((((((((((....)).)))))..)))))))..)))))...........((.(((......))).------))........ ( -19.60) >DroPer_CAF1 81703 106 - 1 ACAUUUAUUGGGCAAUCCAAUCACGAAACUCACGUCCCCA-GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCUUUGUUGGUGUUUUUUUC (((((((((((.....))))).((((((((((((.(....-).)))))..)))))))..))))))........((.(..((...........))..)))........ ( -20.80) >consensus ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCA_GUCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGACUUAUUUCUUUUCUUUCGAUUUCAUUC .((((((((((.....))))).((((((((((((.........)))))..)))))))..)))))........................................... (-14.78 = -14.75 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006